View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_40 (Length: 313)
Name: NF3857_low_40
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 3725747 - 3725465
Alignment:
| Q |
18 |
aggtggtccatgtataagggccactaataatatgtatttttagtctttatggagggacacannnnnnnnngttgcttgctataagaaataaaacgtaaca |
117 |
Q |
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| T |
3725747 |
aggtggtccatgtataagggccgctaataatatgtatttttagtctttatggagggacacattttttttt-ttgcttactataagaaataaaacgtaaca |
3725649 |
T |
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| Q |
118 |
cattgttctaagatatgcttcatacatttgtcttcagtgtaaatgagtcaataccaaacattacttatgctttttgagcattcttgtatatcacacaaca |
217 |
Q |
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| T |
3725648 |
cattgttctaagatatgcttcatacatttgtcttcggtgtaaatgagtcaataccaaacattacttgtgctttttgagcattcttgtatatcacacaaca |
3725549 |
T |
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| Q |
218 |
caccttcatatacatttgacttaattgtgtttgtgcgtgcgagcgtgtgtgttnnnnnnntattctgatataaggttcatctcat |
302 |
Q |
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| T |
3725548 |
caccttcatatacatttgagtcaattgtgtttgtgcgtgcgagcgtgtgtgtt-aaaaaatattctgatataaggttcatatcat |
3725465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 3723976 - 3723850
Alignment:
| Q |
105 |
ataaaacgtaacacattgttctaagatatgcttcatacatttgtcttcagtgtaaa-tgagtcaataccaaacattacttatgctttttgagcattcttg |
203 |
Q |
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|||||| ||||||||||||| ||||| | |||||||| | |||||| |||||||| |||||||| | ||||| |||||| ||||| |||||| |||| |
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| T |
3723976 |
ataaaatgtaacacattgttgtaaga-acacttcatacttatgtctttagtgtaaagtgagtcaagatcaaacgttacttgtgcttcttgagcgcacttg |
3723878 |
T |
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| Q |
204 |
tatatcacacaacacaccttcatatacat |
232 |
Q |
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| T |
3723877 |
tatttcaca-aacacatcttcatatacat |
3723850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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