View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_45 (Length: 282)
Name: NF3857_low_45
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 41176682 - 41176402
Alignment:
| Q |
1 |
ttacattaaactttgtccggaatacacaaagaatgttagccgtgattaatatgtggctgnnnnnnnnnnnagtgtaacaaataactatataaaatattac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
41176682 |
ttacattaaactttgtccggaatacacaaagaatgttagccgtgattaatatgtggcagtttttttttttagtgtaacaaataactatataaaatattac |
41176583 |
T |
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| Q |
101 |
ccttttttggaagtgtgtgttcccttgaagacctttacaacaagcaaacttcatcttcaaatcttcaagtttaagataccaataattaattagataactt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41176582 |
ccttttttggaagtgtgtgttcc-ttgaagacctttacaacaagcaaacttcatcttcaaatcttcaagtttaagataccaataattaattagataactt |
41176484 |
T |
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| Q |
201 |
gtcaaaaaggataattaattagataaatgattcatggcaataaaactattttaattaagagtactatatactttgtaccaat |
282 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41176483 |
gtcaaaaaggataattaattagataaatgtgtcatggcaataaaactattttaattaagtgtactatatactttgtaccaat |
41176402 |
T |
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