View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_46 (Length: 280)
Name: NF3857_low_46
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_46 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 38628995 - 38628733
Alignment:
| Q |
18 |
caagcgtcaaggagtatgaggtattaatcaagttgagtccaagaatcatgaataataagcaaactgtagctcaatctttagtataaatagaaaacataaa |
117 |
Q |
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| T |
38628995 |
caagcgtcaaggagtatgaggtattaatcaagttgagtccaagaatcatgaataataagcaaactgtagctcaatctttagtataaatagaaaacataaa |
38628896 |
T |
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| Q |
118 |
gtgtgccagagtaatagaaatacacaattctattctatctttcatacttcttctaccacttacaatgtacactcattgttgtcaaaacatttgcaattat |
217 |
Q |
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| T |
38628895 |
gtgtgccagagtaatagaaatacacaattctattctatctttcatacttcttctaccacttacaatgtacactcattgttgtcaaaacatttgcaattat |
38628796 |
T |
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| Q |
218 |
gttcaaaagggttacttctgtatatcttttttcttctaaaggtgaattatattctttgcacag |
280 |
Q |
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| T |
38628795 |
gttcaaaagggttacttctgtatatcttttttcttctaaaggtgaattgtattctttgcacag |
38628733 |
T |
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