View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_low_5 (Length: 732)
Name: NF3857_low_5
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 46686607 - 46687046
Alignment:
| Q |
15 |
caaaggcaagaacaaaacgggtaatttaggaatttcagttgagaatccaacatcaaatttctttcgttacaaactcatagccatcattaaaacaccacca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46686607 |
caaaggcaagaacaaaacgggtaatttaggaatttcagttgagaatccaacatcaaatttctttcgttacaaactcatagccatcattaaaacaccacca |
46686706 |
T |
|
| Q |
115 |
acttcttggttgtttcccatacaaggaaaacaaagtcaaactttataggatcactaaaaacacgtgtaaactttttggatgttcctttgaagagtnnnnn |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46686707 |
acttcttggttgtttcccatacaaggaaaacaaagtcaaactttataggatcactaaaaacacgtgtaaactttttggatgttcctttgaagagtaaaaa |
46686806 |
T |
|
| Q |
215 |
nnnccaaattaaacagaacaaaacaaaccgaatttttaaatgagttggatgatagatctcaaaataagaacatttcgagaaaattgagtgataaaattgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46686807 |
aaaccaaattaaacagaacaaaacaaaccgaatttttaaatgagttggat---agatctcaaaataagaacatttcgagaaaattgagtgataaaattgt |
46686903 |
T |
|
| Q |
315 |
taattaaaaagattagtataagaaaacgaaagataaacaaatttcttttctgttttagtatacggcggggatcattaagaagagaaattgttggtttatg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46686904 |
taattaaaaagattagtataagaaaacgaaagataaacagatttcttttctgttttagtatacggcggggatcattaagaagagaaattgttggtttatg |
46687003 |
T |
|
| Q |
415 |
tttcaaaagggtaacaaaacaaacaaatatgagcatgtatttt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46687004 |
tttcaaaagggtaacaaaacaaacaaatatgagcatgtatttt |
46687046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 46687132 - 46687181
Alignment:
| Q |
543 |
caaccttctatgtgagaaatccgtgaagatggaatttcttgaatggtttc |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46687132 |
caaccttctatgtgagaaatccgtgaagatggaatttcttgaatggtttc |
46687181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 713
Target Start/End: Original strand, 46687271 - 46687302
Alignment:
| Q |
682 |
ttaacagctaacaattttccgtcagaaacaaa |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
46687271 |
ttaacagctaacaattttccgtcagaaacaaa |
46687302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University