View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_54 (Length: 251)
Name: NF3857_low_54
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 2440810 - 2441051
Alignment:
| Q |
2 |
aagaagaattgatgatggagttgttgtggtaatatgtgaaattgaaaagaaaaatgagaagaggggtagggaaatcgtttgttccttagattccnnnnnn |
101 |
Q |
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| T |
2440810 |
aagaagaattgatgatggagttgttgtggtaatatgtgaaatt-aaaagaaaaatgagaagaggggtagggaaatcgtttgttccttagattccaaaaaa |
2440908 |
T |
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| Q |
102 |
nnnn-tcatgcatacaatcatcaaaattgatggtctc--agtctaacatagcacaattcctatgttgatcattatatgcttatattgttatataattaca |
198 |
Q |
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|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440909 |
aaaaatcatgcatacaatcatcaaaattggttgtctctaagtctaacatagcacaattcctatgttgatcattatatgcttatattgttatataattaca |
2441008 |
T |
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| Q |
199 |
ttttgcttgactatgtaatctttgctggtctctatgtcctatg |
241 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2441009 |
ttttgcttgactatgtaatctttgttggtctctatgtcctatg |
2441051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 2596067 - 2596006
Alignment:
| Q |
5 |
aagaattgatgatggagttgt-tgtggtaatatgtgaaattgaaaagaaaaatgagaagagg |
65 |
Q |
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||||||| ||||||||||||| | |||||||| || |||||||||||||||||||||||||| |
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| T |
2596067 |
aagaatttatgatggagttgtgtttggtaataggtaaaattgaaaagaaaaatgagaagagg |
2596006 |
T |
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