View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_low_56 (Length: 250)

Name: NF3857_low_56
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_low_56
NF3857_low_56
[»] chr2 (2 HSPs)
chr2 (1-233)||(37537845-37538077)
chr2 (102-180)||(10150651-10150729)
[»] chr1 (1 HSPs)
chr1 (122-183)||(870961-871022)
[»] chr8 (1 HSPs)
chr8 (148-180)||(31315549-31315581)
[»] chr7 (1 HSPs)
chr7 (140-180)||(28340940-28340980)
[»] chr6 (2 HSPs)
chr6 (140-180)||(2514636-2514676)
chr6 (140-180)||(33416319-33416359)
[»] chr3 (1 HSPs)
chr3 (140-180)||(1395605-1395645)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37538077 - 37537845
Alignment:
Q  1 actgcacatatcattgtcaatctcatcgatttagaacaactttcatataaaatgatgcacaatatttcaaattaaagttaatcgaacgaatcacttagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37538077 actgcacatatcattgtcaatctcatcgatttagaacaactttcatataaaatgatgcacaatatttcaaattaaagttaatcgaacgaatcactaagca 37537978  T
Q  101 ttgttttgataaacgccttaattaagcgcttactaaatgagtgcatatgtataagctatttttataataaaagatgaaattaatgtagtgacttactaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37537977 ttgttttgataaacgccttaattaagcgcttactaaatgagtgcatatgtataagctatttttataataaaagatgaaattaatgtagtgacttactaag 37537878  T
Q  201 attgtctcccactgaaaactgttgggaagatgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  37537877 attgtctcccactgaaaactgttgggaagatgt 37537845  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 10150651 - 10150729
Alignment:
Q  102 tgttttgataaacgccttaattaagcgcttactaaatgagtgcatatgtataagctatttttataataaaagatgaaat 180  Q
    ||||| |||||||  ||||||||||| |||| || || ||||  |||||||||| ||||| ||||||||||||| ||||    
T  10150651 tgtttagataaacaacttaattaagcacttattatataagtgtttatgtataagttatttctataataaaagataaaat 10150729  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 870961 - 871022
Alignment:
Q  122 ttaagcgcttactaaatgagtgcatatgtataagctatttttataataaaagatgaaattaa 183  Q
    |||||||||||  | || ||||| ||||||||| |||||||||||| ||||||| |||||||    
T  870961 ttaagcgcttatcatataagtgcttatgtataaactatttttataacaaaagataaaattaa 871022  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 31315581 - 31315549
Alignment:
Q  148 tgtataagctatttttataataaaagatgaaat 180  Q
    |||||||||||||||||||||||||||| ||||    
T  31315581 tgtataagctatttttataataaaagataaaat 31315549  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 28340980 - 28340940
Alignment:
Q  140 agtgcatatgtataagctatttttataataaaagatgaaat 180  Q
    ||||| ||| |||| ||||||||||||||||||||||||||    
T  28340980 agtgcttatctatatgctatttttataataaaagatgaaat 28340940  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 2514636 - 2514676
Alignment:
Q  140 agtgcatatgtataagctatttttataataaaagatgaaat 180  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  2514636 agtgcttatgtataagctatttctataataaaagataaaat 2514676  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 33416319 - 33416359
Alignment:
Q  140 agtgcatatgtataagctatttttataataaaagatgaaat 180  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  33416319 agtgcttatgtataagctatttttataacaaaagataaaat 33416359  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 1395605 - 1395645
Alignment:
Q  140 agtgcatatgtataagctatttttataataaaagatgaaat 180  Q
    |||||||||||||||||||||| ||||| ||||||| ||||    
T  1395605 agtgcatatgtataagctatttctataacaaaagataaaat 1395645  T

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