View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_58 (Length: 250)
Name: NF3857_low_58
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_58 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 40607318 - 40607091
Alignment:
| Q |
23 |
tatttgttttaattgatatatcagtgccttgaaagcactttttaacattctcctaacaaaatttgagagaagaaaaatagtataatggctagtggctttg |
122 |
Q |
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||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40607318 |
tatttgttttagttgattgatcaatgccttgaaagcactttttaacattctcctaacaaaatttgagagaagaaaaatagtataatggctagtggctttg |
40607219 |
T |
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| Q |
123 |
catgtatgtcacgacgcatctatacacattgaaactcttttgtctttgtcgaatatactttgctttgttgaatttttagtactggtctcatttcttgatc |
222 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40607218 |
catgtatgtcacgacgcatctatagacattgaaactcttttgtcttggtcgaatatactttgctttgttgaatttttagtactggtctcctttcttgatc |
40607119 |
T |
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| Q |
223 |
tcttcatcatcattcaccaactcttctg |
250 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40607118 |
tcttcatcatcattcaccaactcttctg |
40607091 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25197175 - 25197144
Alignment:
| Q |
1 |
ttataattagggacggagggagtatttgtttt |
32 |
Q |
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| T |
25197175 |
ttataattagggacggagggagtatttgtttt |
25197144 |
T |
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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 259136 - 259165
Alignment:
| Q |
1 |
ttataattagggacggagggagtatttgtt |
30 |
Q |
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| T |
259136 |
ttataattagggacggagggagtatttgtt |
259165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45907268 - 45907239
Alignment:
| Q |
1 |
ttataattagggacggagggagtatttgtt |
30 |
Q |
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| T |
45907268 |
ttataattagggacggagggagtatttgtt |
45907239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7784268 - 7784301
Alignment:
| Q |
1 |
ttataattagggacggagggagtatttgttttaa |
34 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
7784268 |
ttataattagggacggagggagtattttttttaa |
7784301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45742820 - 45742848
Alignment:
| Q |
1 |
ttataattagggacggagggagtatttgt |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45742820 |
ttataattagggacggagggagtatttgt |
45742848 |
T |
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