View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_low_60 (Length: 248)

Name: NF3857_low_60
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_low_60
NF3857_low_60
[»] chr1 (15 HSPs)
chr1 (20-230)||(34309556-34309771)
chr1 (167-230)||(45525799-45525862)
chr1 (161-230)||(35190668-35190737)
chr1 (161-230)||(45531903-45531972)
chr1 (161-209)||(35476643-35476691)
chr1 (161-230)||(35147654-35147723)
chr1 (161-230)||(35200237-35200306)
chr1 (161-230)||(35205250-35205319)
chr1 (161-230)||(35295656-35295725)
chr1 (161-230)||(35212292-35212361)
chr1 (161-208)||(35248593-35248640)
chr1 (163-231)||(35252395-35252463)
chr1 (161-219)||(35219396-35219454)
chr1 (161-219)||(35225239-35225297)
chr1 (161-209)||(35216256-35216304)
[»] chr2 (1 HSPs)
chr2 (161-222)||(33138421-33138482)
[»] chr3 (5 HSPs)
chr3 (164-231)||(23332094-23332161)
chr3 (164-222)||(19246778-19246836)
chr3 (71-222)||(899486-899642)
chr3 (164-222)||(17664375-17664433)
chr3 (166-225)||(53924101-53924160)
[»] chr7 (2 HSPs)
chr7 (161-219)||(38634919-38634977)
chr7 (161-218)||(38632183-38632240)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 34309556 - 34309771
Alignment:
Q  20 gggggcaccagccataacatttacnnnnnnnttgcctgacacgatgtttcacgttcggatccaaacagacagatttagtgctgctat----agcttcaac 115  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||    
T  34309556 gggggcaccagccataacatttacaaaaaaattgcctgacacgatgtttcacgttcggatccaaacagacagatttagtgctgctatgtccaccttcaac 34309655  T
Q  116 accaacggataaatccataggttcattatcaaatctgtatgcatta-tcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaaga 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34309656 accaacggataaatccataggttcattatcaaatccgtatgcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaaga 34309755  T
Q  215 gtgttaatcatcccac 230  Q
    ||||||||||||||||    
T  34309756 gtgttaatcatcccac 34309771  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 45525799 - 45525862
Alignment:
Q  167 ttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||    
T  45525799 ttgaacacgagataagctgcatactgagtatttggagacaaggcaagattgttaatcatcccac 45525862  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35190668 - 35190737
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| ||| || || ||||||||||    
T  35190668 atcatcttgaacacaagataagccgcatactgggtatttggggacaaggcaagggtatttatcatcccac 35190737  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 45531903 - 45531972
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||    
T  45531903 atcattttgaacacaagataagctgcatattgagtatttggggacaaggcaagattgttaatcatcccac 45531972  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 35476643 - 35476691
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaagg 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35476643 atcatcttgaacacaagataagccgcatactgagtatttggggacaagg 35476691  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35147654 - 35147723
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||  ||| ||||| ||| ||||||    
T  35147654 atcatcttgaacacaagataagccgcatactgggtatttggggacaagctaagggtgtttatcgtcccac 35147723  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35200237 - 35200306
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| | |||  |||| ||||||||||    
T  35200237 atcatcttgaacacaagataagctgcatactgagtatttggggacaatgcaagcatgtttatcatcccac 35200306  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35205250 - 35205319
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||| | |||| |||||||||||||||    
T  35205250 atcatcttgaacacaagataagctgcatattgagtatttggagacaatgcaagattgttaatcatcccac 35205319  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 35295725 - 35295656
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||| | | ||||| ||||||||||    
T  35295725 atcatcttgaacacaagataagctgcatattgagtatttggggacaaggcaggggtgtttatcatcccac 35295656  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35212292 - 35212361
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 230  Q
    |||||||||||||| ||||||||||||||  |||||||||| ||||||| ||||  |||||||| |||||    
T  35212292 atcatcttgaacacaagataagccgcatagcgagtatttggagacaaggcaagatcgttaatcaccccac 35212361  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 35248593 - 35248640
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaag 208  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  35248593 atcaccttgaacacaagataagctgcatactgagtatttggggacaag 35248640  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 35252395 - 35252463
Alignment:
Q  163 catcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccaca 231  Q
    |||||||||||| ||||| ||  |||||||||||||||||||||||| ||  ||||| ||||| |||||    
T  35252395 catcttgaacacaagatacgctacatactgagtatttggggacaaggcaatggtgtttatcataccaca 35252463  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 35219396 - 35219454
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgtt 219  Q
    |||||||||||||| |||||||  |||||| |||||||||| ||||||| ||| |||||    
T  35219396 atcatcttgaacacaagataagttgcatacagagtatttggagacaaggtaagggtgtt 35219454  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 35225239 - 35225297
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgtt 219  Q
    |||||||||||||| |||||||   ||||| |||||||||||||||||| ||| |||||    
T  35225239 atcatcttgaacacaagataagttacataccgagtatttggggacaaggcaagggtgtt 35225297  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 35216256 - 35216304
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaagg 209  Q
    |||||||| ||||| |||||||  ||||||||||||||||| |||||||    
T  35216256 atcatcttaaacacaagataagttgcatactgagtatttggagacaagg 35216304  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 33138482 - 33138421
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaat 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33138482 atcatcttgaacacgagataagccgcgtactgagtatttggggacaaggaaagagtgttaat 33138421  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 23332094 - 23332161
Alignment:
Q  164 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccaca 231  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  23332094 atcttaaacacgaggtaagctgcatactgagtatttggggacaatgaaagagtgttaataatcccaca 23332161  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 19246836 - 19246778
Alignment:
Q  164 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaat 222  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  19246836 atcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaat 19246778  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 899642 - 899486
Alignment:
Q  71 cgttcggatccaaacagacagatttagtgctgctatagc----ttcaacaccaacggataaatccataggttcattatcaaatctgtatgcatta-tcat 165  Q
    |||| |||||||||||||| ||||||||||| |||| ||    | | ||| |||  ||||  |||||||||||||| |||||||  ||  ||| | ||||    
T  899642 cgtttggatccaaacagacggatttagtgctactatggccacctactacatcaattgataggtccataggttcattctcaaatccataatcatcaatcat 899543  T
Q  166 cttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaat 222  Q
    ||||||||| |||||||||||||||  ||||||| |||||||||||| |||||||||    
T  899542 cttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaat 899486  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 17664433 - 17664375
Alignment:
Q  164 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaat 222  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  17664433 atcttgaagacgagataagctgcatactgagtatttggggacaatgaaagagtcttaat 17664375  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 53924160 - 53924101
Alignment:
Q  166 cttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcat 225  Q
    ||||||||| ||||||||||||||| |||||||||||||||||  ||| ||||| |||||    
T  53924160 cttgaacacaagataagccgcataccgagtatttggggacaagacaagggtgtttatcat 53924101  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 38634919 - 38634977
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgtt 219  Q
    ||||||| |||||| ||||||||  |||||||||||||| |||||||| ||||||||||    
T  38634919 atcatctggaacacaagataagctacatactgagtatttcgggacaagtaaagagtgtt 38634977  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 38632183 - 38632240
Alignment:
Q  161 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgt 218  Q
    |||| ||||||||| ||||||||  |||||||||||||| | ||||||| ||||||||    
T  38632183 atcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgt 38632240  T

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