View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_61 (Length: 243)
Name: NF3857_low_61
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 26787746 - 26787960
Alignment:
| Q |
16 |
cggttgaggagttccagatggagtgattgattgacggcggcgacggcggccgggggaggagtaggtgttggcgattggacttgaattggagttgtccggt |
115 |
Q |
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| T |
26787746 |
cggttgaggagttccagatggagtgattgattgacggcggcgacggcggccgggggaggagtaggtgttggcgattggacttgaattggagttgtccggt |
26787845 |
T |
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| Q |
116 |
gaagaaggacctgaaaagtgaaaaatagggtttcagaaaatt-------gaaattagaaattagaataagaatgtggagatgaaacgaaagttacgaacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26787846 |
gaagaaggacctgaaaagtgaaaaatagggtttcagaaaattgaaattagaaattagaaattagaataagaatgtggagatgaaacgaaagttacgaacc |
26787945 |
T |
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| Q |
209 |
a-ttattggaatcca |
222 |
Q |
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| T |
26787946 |
acttgttggaatcca |
26787960 |
T |
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