View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_62 (Length: 242)
Name: NF3857_low_62
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 55978436 - 55978229
Alignment:
| Q |
20 |
actaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttcatttccatag |
119 |
Q |
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| T |
55978436 |
actaccacttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttcatttccatag |
55978337 |
T |
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| Q |
120 |
aagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgtcaacaccataactcttaaaatc |
219 |
Q |
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| T |
55978336 |
aagcatttaaactcaaactcgcgtttgtgtactttgcaaaagaaacaccttctttagaatactctttgaaagtgttgtcaacaccataacccttaaaatc |
55978237 |
T |
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| Q |
220 |
aacctttg |
227 |
Q |
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|||||||| |
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| T |
55978236 |
aacctttg |
55978229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 14866103 - 14865902
Alignment:
| Q |
26 |
ccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttcatttccatagaagcac |
125 |
Q |
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|||||||||||||| || || | |||||||||||| || |||||| || |||| ||||||||||||||| | | | || |||| || || |||||||| |
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| T |
14866103 |
ccttctttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccactcgcagcatttttgttcactttcacagaagcac |
14866004 |
T |
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| Q |
126 |
ttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgtcaacaccataactcttaaaatcaacctt |
225 |
Q |
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|||||||| ||||| ||||||||||||||| |||||||| |||||| || ||||||||||||||| || | ||||||||| | |||||| ||||||| |
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| T |
14866003 |
ttaaactcgaactcacgtttgtgtactttgcaaaagaaacaccttccttcgaatactctttgaaatcatttttaacaccatagcctttaaaaccaacctt |
14865904 |
T |
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| Q |
226 |
tg |
227 |
Q |
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|| |
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| T |
14865903 |
tg |
14865902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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