View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_low_64 (Length: 239)
Name: NF3857_low_64
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_64 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2440791 - 2440570
Alignment:
| Q |
1 |
acatggaaacttgatcatgtttatttagttaatttcatgccaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440791 |
acatggaaacttgatcatgtttatttagttaatttcatggcaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgct |
2440692 |
T |
|
| Q |
101 |
ccacttggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2440691 |
ccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacaattcccttatccaaaacagcaatcaaatcacagttttgaatagtactca |
2440592 |
T |
|
| Q |
201 |
acctatgtgctacaaccacgct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2440591 |
acctatgtgctacaaccacgct |
2440570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 2592731 - 2592516
Alignment:
| Q |
7 |
aaacttgatcatgtttatttagttaatttcatgccaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccactt |
106 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| |||||| ||| |||||||| ||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2592731 |
aaacttgatattgtttatttagttgatttcatgtgaagaatcaataattatgttggttggtcttatttttagacttatcaaagagtaatatgctccactt |
2592632 |
T |
|
| Q |
107 |
ggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactcaacctat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2592631 |
ggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctat |
2592532 |
T |
|
| Q |
207 |
gtgctacaaccacgct |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2592531 |
gtgctacaaccacgct |
2592516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 2624264 - 2624060
Alignment:
| Q |
18 |
tgtttatttagttaatttcatgccaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccacttggccctttaga |
117 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2624264 |
tgtttatttatttaatttcatgtggagaatcaacaattatgttggttggtcttttttgtagacttatcaaagagtaatatgctccacttggccctttaga |
2624165 |
T |
|
| Q |
118 |
caacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactcaacctatgtgctacaacc |
217 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2624164 |
caacaaggatgaatgtgttccattctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatgtgctacaacc |
2624065 |
T |
|
| Q |
218 |
acgct |
222 |
Q |
| |
|
||||| |
|
|
| T |
2624064 |
acgct |
2624060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 2671914 - 2672126
Alignment:
| Q |
7 |
aaacttgatcatgtttatttagttaatttcatgccaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccactt |
106 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| | | || ||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2671914 |
aaacttgatattgtttatttagttgatttcatgtgaagaatcaatagtaatgttggttggtcttctttgtagacttaccaaagagtaataagctccactt |
2672013 |
T |
|
| Q |
107 |
ggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactcaacctat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2672014 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaattttgtatagtactcaacctat |
2672113 |
T |
|
| Q |
207 |
gtgctacaaccac |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2672114 |
gtgctacaaccac |
2672126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 2568550 - 2568751
Alignment:
| Q |
18 |
tgtttatttagttaatttcatgccaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccacttggccctttaga |
117 |
Q |
| |
|
||||||||||||| |||||||| |||||| | ||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
2568550 |
tgtttatttagttgatttcatgtgaagaatacgaaattaaattgtttggtcttctttgcagacttaccaaagagtaataagcaccacttggcccttttga |
2568649 |
T |
|
| Q |
118 |
caacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactcaacctatgtgctacaacc |
217 |
Q |
| |
|
||| ||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
2568650 |
caataaatttgaatgtgttcctttctcaacaacaatgcccttatccaaaacagcaatcaaatcacaattttgtatagtactcaacctatgtgccacaacc |
2568749 |
T |
|
| Q |
218 |
ac |
219 |
Q |
| |
|
|| |
|
|
| T |
2568750 |
ac |
2568751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 2451467 - 2451295
Alignment:
| Q |
47 |
tcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccacttggccctttagacaacaaagatgaatgtgttcctttctcaa |
146 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2451467 |
tcagcaattgtattgggtggtcttctttgtagacttaccatagagtaataagctccacttggtcctttagacaacaaagatgaatgtgttcctttctcaa |
2451368 |
T |
|
| Q |
147 |
taacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactcaacctatgtgctacaaccac |
219 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
2451367 |
taacactacccttatccaaaacaacaatcatatcacaattttgtatagtactcaacctatgagccacaaccac |
2451295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 2640748 - 2640963
Alignment:
| Q |
1 |
acatggaaacttgatcatgtttatttagttaatttcatgccaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgct |
100 |
Q |
| |
|
||||||||| | || | ||||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2640748 |
acatggaaaatcgaccttgtttatttagttgatttcatgtgaagaaccaacaattgtattggttggtcttctttgtagacttactaaagagtaataaact |
2640847 |
T |
|
| Q |
101 |
ccacttggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtactca |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2640848 |
ccacttggtcccaaagacaacaaagatgaatgtgttcctttttcaacaacaatccccttatccaaaacagcaatcaaatcacaattttgtatagtactca |
2640947 |
T |
|
| Q |
201 |
acctatgtgctacaac |
216 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2640948 |
acctatgtgcgacaac |
2640963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2596090 - 2596310
Alignment:
| Q |
1 |
acatggaaacttgatcatgtttatttagttaatttcatgccaagaatcagcaattatattgtttg--gtcttctttgtagacttaccaaagagtaatatg |
98 |
Q |
| |
|
||||||||||| || | ||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
2596090 |
acatggaaactggaccttgtttatttagttgatttcatgtgaagaatcaacaattgtattggttatagtcttctttgtagacttaccaaagagtaataaa |
2596189 |
T |
|
| Q |
99 |
ctccacttggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgtatagtact |
198 |
Q |
| |
|
|||||||||| || ||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2596190 |
ctccacttggtcccaaagataacaaagacgaatgtgttcctttctcaacaacaattcccttatccaagacagcaatcaaatcacaattttgtatagtact |
2596289 |
T |
|
| Q |
199 |
caacctatgtgctacaaccac |
219 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
2596290 |
caacctatgtgccacaaccac |
2596310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 17870107 - 17870162
Alignment:
| Q |
164 |
aaaacagcaatcaaatcacagttttgtatagtactcaacctatgtgctacaaccac |
219 |
Q |
| |
|
||||||||||| | |||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
17870107 |
aaaacagcaataacatcacaattgtgtatggtactcaacctatgtgctacaaccac |
17870162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University