View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_66 (Length: 239)
Name: NF3857_low_66
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41176297 - 41176086
Alignment:
| Q |
1 |
aaagatgaag-aggatttggaaggaaagaaatgatgaagggaatataggcgtccagcatttcatattagggtttatatttctctacaaaattaaaacgtt |
99 |
Q |
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| T |
41176297 |
aaagatgaaggaggatttggaaggaaagaaatgatgaaaggaatataggcgtccagcatttcatattagggtttatatttctctacaaaattaaaacgtt |
41176198 |
T |
|
| Q |
100 |
ttcatataaagaaaccaaaaaatatatatgttttagagaaatgtcttgaaggattttattttaacaaatttttcaagtccttttaatattgttataacac |
199 |
Q |
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| T |
41176197 |
ttcatatggagaaaccaaaaaatatatatgttttagagaaatgtcttgaaggattttattttaacaaatttttcaagtccttttaatattgttataacac |
41176098 |
T |
|
| Q |
200 |
tgtcagagcaat |
211 |
Q |
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|||||||||||| |
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| T |
41176097 |
tgtcagagcaat |
41176086 |
T |
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