View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_low_7 (Length: 586)
Name: NF3857_low_7
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_7 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Complemental strand, 14580909 - 14580361
Alignment:
| Q |
13 |
aatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagtacaaattaatgtacctg |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14580909 |
aatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagtacaaattaatgtacttg |
14580810 |
T |
|
| Q |
113 |
aatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttaca |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14580809 |
aatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttaca |
14580710 |
T |
|
| Q |
213 |
agctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattatccgaaatggcactgcacaaacacaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || |
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|
| T |
14580709 |
agctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgca---------ca |
14580619 |
T |
|
| Q |
313 |
aattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatc |
412 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14580618 |
aattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatc |
14580519 |
T |
|
| Q |
413 |
ttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttcnnnnnnncttgcagcattagctgattcatc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
14580518 |
ttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttctttttttcttgcagcattagctgattcatc |
14580419 |
T |
|
| Q |
513 |
tattggtagaaaaaacatgctaatcttttcttgtgtctcaatgtcaataacttccatg |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14580418 |
tattggtagaaaaaacatgctaatcttttcttgtgtctcaatgtcaataacttccatg |
14580361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 74 - 570
Target Start/End: Original strand, 14542739 - 14543226
Alignment:
| Q |
74 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14542739 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14542838 |
T |
|
| Q |
174 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14542839 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
14542938 |
T |
|
| Q |
274 |
actgataattatccgaaatggcactgcacaaacacaacaaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttggg |
373 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14542939 |
actgataattacccaaaatggcactgcacaaa---------ttcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttggg |
14543029 |
T |
|
| Q |
374 |
acacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtct |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14543030 |
acacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtct |
14543129 |
T |
|
| Q |
474 |
tcttggttcnnnnnnncttgcagcattagctgattcatctattggtagaaaaaacatgctaatcttttcttgtgtctcaatgtcaataacttccatg |
570 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14543130 |
tcttggttctttttttcttgcagcattagctgattcatctattggcagaaaaaacatgctaatcttttcttgtgtctcaatgtcaataacttccatg |
14543226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 74 - 569
Target Start/End: Complemental strand, 34264065 - 34263573
Alignment:
| Q |
74 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
173 |
Q |
| |
|
||||||||||||| ||||||| |||||| | |||| | ||||||||||| | ||||| | ||||||| ||| || | ||||||||| ||| ||||| |
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|
| T |
34264065 |
caatagcaatggagggttcagcacaaatcactgtatcggaatctcattcaa---ttgaggaggaaaagacaccgatgt---catgggatgaaataataga |
34263972 |
T |
|
| Q |
174 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
273 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34263971 |
aaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaacagtcattcataagcatttac |
34263872 |
T |
|
| Q |
274 |
actgataattatccgaaatggcactgcacaaacacaa---caaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtctt |
370 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |||||||| |||| ||||| || |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
34263871 |
actgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaactctcaagatcttcttggtctt |
34263772 |
T |
|
| Q |
371 |
gggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttg |
470 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
34263771 |
gggacacacacccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcacaggtttaccacaatcttctttcttcataggttg |
34263672 |
T |
|
| Q |
471 |
tcttcttggttcnnnnnnncttgcagcattagctgattcatctattggtagaaaaaacatgctaatcttttcttgtgtctcaatgtcaataacttccat |
569 |
Q |
| |
|
| || |||| | |||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
34263671 |
tttttttggcttttcctttcttgcagcattagctgattcatcttttggtcgaaaaaacatgttattcttttcttgtgttctgatgtcaataacttccat |
34263573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 253 - 570
Target Start/End: Complemental strand, 35622810 - 35622490
Alignment:
| Q |
253 |
caatcattcataagcatttacactgataattatccgaaatggcactgcacaaacacaa---caaattcaacatgcacttcatcttctgatatatgcaaac |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||| ||||||| |||||||| ||||||| |
|
|
| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
35622711 |
T |
|
| Q |
350 |
tcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccaca |
449 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
35622710 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
35622611 |
T |
|
| Q |
450 |
atcttctttctttataggttgtcttcttggttcnnnnnnncttgcagcattagctgattcatctattggtagaaaaaacatgctaatcttttcttgtgtc |
549 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||| ||||||||||||||||| || ||| | ||| | ||||| | ||||| |||||||||||| |
|
|
| T |
35622610 |
atcttctttcttcacaggctgtcttcttggttcttcctttcttgcagcattagctgactcgtctttcggtcggaaaaaagtcctaatattttcttgtgtc |
35622511 |
T |
|
| Q |
550 |
tcaatgtcaataacttccatg |
570 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35622510 |
tcaatgtcaataacttccatg |
35622490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 35623182 - 35622991
Alignment:
| Q |
70 |
ttagcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaatta |
169 |
Q |
| |
|
|||| |||||||||||||||| | || |||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
35623182 |
ttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatca |
35623083 |
T |
|
| Q |
170 |
tagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
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|
| T |
35623082 |
tagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
35622991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 8e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 151 - 436
Target Start/End: Original strand, 37599764 - 37600052
Alignment:
| Q |
151 |
ttatcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcac |
250 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| || |||||||| || |||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
37599764 |
ttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgcac |
37599863 |
T |
|
| Q |
251 |
aacaatcattcataagcatttacactgataattatccgaaatggcactgcacaaacacaa---caaattcaacatgcacttcatcttctgatatatgcaa |
347 |
Q |
| |
|
|| | ||||| ||||||||||||||||||||||| || |||||||| |||| | |||||| |||||||| |||| ||| |||| |||||||| ||||| |
|
|
| T |
37599864 |
aagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaattcatcatgtactccatcctctgatatttgcaa |
37599963 |
T |
|
| Q |
348 |
actcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatca |
436 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| || ||||||||||| |
|
|
| T |
37599964 |
actctagagatcttcttggtcttgggacacacacccttcaaacacaatcatttctaactggaatcttgaatgtgttaacacattcatca |
37600052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
241 |
tttgatgcacaacaatcattcataagcatttacactgataattatccgaaatggcactgcacaaacaca-acaaattcaacatgcacttcatcttctgat |
339 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||| || ||||||||||||||||||||| ||||||||| |||||||| |||| |||||| |
|
|
| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacacacacaaattcatcatgcactccatcctctgat |
37605581 |
T |
|
| Q |
340 |
atatgcaaac |
349 |
Q |
| |
|
|| ||||||| |
|
|
| T |
37605582 |
atttgcaaac |
37605591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 470
Target Start/End: Original strand, 10404054 - 10404133
Alignment:
| Q |
391 |
acaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttg |
470 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||| || | |||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
10404054 |
acaatcatatctcaatggagtcttgaatgtgcaagtagcttcatcacaggtttaccacaatcttcattcttcataggttg |
10404133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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