View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_71 (Length: 230)
Name: NF3857_low_71
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 41998957 - 41998740
Alignment:
| Q |
7 |
ccgtcgcagtaatactactagcactcaccgccaccgtccattcatgtccaccgtcagatagggcggcgttattagcgttcaaagcagcactccacgaacc |
106 |
Q |
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| T |
41998957 |
ccgtcgcagcaatactactagcactcaccgccaccgtccattcatgtccaccgtcagatagggcggcgttattagcgttcaaagcagcactccacgaacc |
41998858 |
T |
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| Q |
107 |
ccaactcggaaaactcggtatcttcacctcatggaccggagcagattgctgcaacaaatggtacggcgttagctgcgacaaagaatcccgccgcgtcgcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41998857 |
ccaactcggaaaactcggtatcttcacctcatggaccggagcagattgctgcaacaaatggtacggcgttagctgcgacaaagaatcccgccgcgtcgcc |
41998758 |
T |
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| Q |
207 |
gatatcaacctccgcggc |
224 |
Q |
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|||||||||||||||||| |
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| T |
41998757 |
gatatcaacctccgcggc |
41998740 |
T |
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