View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_75 (Length: 219)
Name: NF3857_low_75
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 46161503 - 46161635
Alignment:
| Q |
1 |
ctattccaattccacgaaggaaccactgtcatgatggaactgttaatttattttgcatattgagagattttattccaattccgctaaatattttacgagt |
100 |
Q |
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| T |
46161503 |
ctattccaattccaccaaggaaccactttcatgatggaactgttaatttattttgcatattgagagattttattccaattccgctaaatattttactagt |
46161602 |
T |
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| Q |
101 |
ttgatgatacacacagtaacaacatgaagatgg |
133 |
Q |
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| T |
46161603 |
ttgatgatacacacagtaacaacatgaagatgg |
46161635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 46168319 - 46168360
Alignment:
| Q |
3 |
attccaattccacgaaggaaccactgtcatgatggaactgtt |
44 |
Q |
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| T |
46168319 |
attccaattccaccaaggaaccactttcatgatggaactgtt |
46168360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 46168586 - 46168631
Alignment:
| Q |
60 |
ttgagagattttattccaattccgctaaatattttacgagtttgat |
105 |
Q |
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| T |
46168586 |
ttgagagattttattccgattccactaaatattttactagtttgat |
46168631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 46183417 - 46183490
Alignment:
| Q |
7 |
caattccacgaaggaaccactgtcatgatggaactgttaatttattttgcatattgagagattttattccaatt |
80 |
Q |
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| T |
46183417 |
caattccaccaaggaaccacttttatgtttaaactgttgatttgtgttgcattttgagagattttattccaatt |
46183490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 46170090 - 46170166
Alignment:
| Q |
29 |
tcatgatggaactgttaatttattttgcatattgagagattttattccaattccgctaaatattttacgagtttgat |
105 |
Q |
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| T |
46170090 |
tcatgatggaaccgttgatttgttttgctttttgagagattttattctgatcccacgaaatattttactagtttgat |
46170166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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