View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_low_8 (Length: 536)

Name: NF3857_low_8
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_low_8
NF3857_low_8
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-524)||(20528-21051)
[»] chr8 (3 HSPs)
chr8 (5-52)||(24413615-24413662)
chr8 (14-57)||(18964123-18964166)
chr8 (14-52)||(926852-926890)
[»] chr6 (2 HSPs)
chr6 (5-52)||(7938073-7938120)
chr6 (5-52)||(16766654-16766701)
[»] chr3 (1 HSPs)
chr3 (5-52)||(10335341-10335388)
[»] chr7 (2 HSPs)
chr7 (16-62)||(18213100-18213146)
chr7 (5-45)||(13585271-13585311)
[»] chr5 (1 HSPs)
chr5 (451-493)||(33465028-33465070)
[»] chr4 (2 HSPs)
chr4 (14-52)||(27706241-27706279)
chr4 (15-47)||(13483995-13484027)
[»] chr1 (1 HSPs)
chr1 (12-46)||(15323126-15323160)
[»] chr2 (3 HSPs)
chr2 (5-50)||(23354707-23354752)
chr2 (18-62)||(18631467-18631511)
chr2 (14-62)||(34785046-34785094)
[»] scaffold0227 (1 HSPs)
scaffold0227 (14-46)||(15018-15050)
[»] scaffold0122 (1 HSPs)
scaffold0122 (14-46)||(8629-8661)


Alignment Details
Target: scaffold0168 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 21051 - 20528
Alignment:
Q  1 aaccgtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtgttcgtatatgtgtttcacagtacacaacaaacaatgaatagtttgtattcnnnnn 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         
T  21051 aaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgtatctgtgtttcacagtacacaacaaacaatgaatagtttgtattcaaaaa 20952  T
Q  101 nnctaagtgaagacatatttagttgattacctgtctcactgtctatattattaacactgtcagagtcagagtgtaaggagtaagatccagtttctgaaaa 200  Q
      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20951 aactaagtgaagacatatttagttaattacctgtctcactgtctatattattaacactgtcagagtcagagtgtaaggagtaagatccagtttctgaaaa 20852  T
Q  201 gggtgatctattttctatattcttcatgcggccaagcaaatatgttttatctgctttaatatctttaaaatcctctcctcttgcttcattgagtctgtat 300  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20851 gggtgatctattttctatcttcttcatgcgaccaagcaaatatgttttatctgctttaatatctttaaaatcctctcctcttgcttcattgagtctgtat 20752  T
Q  301 gaaggagtattaccaccaccactttcttctattaaagttccatatttgtttctataaaaatccaattcagcttctaaagctctaatctcttcctctcttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20751 gaaggagtattaccaccaccactttcttctattaaagttccatatttgtttctataaaaatccaattcagcttctaaagctctaatctcttcctctcttt 20652  T
Q  401 tgataagcatgtcattagttgcctctaatgcttcctcatcgtactccgcctgttcttccatcattctttgatactgcaaagcttccatctgcactgctgc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20651 tgataagcatgtcattagttgcctctaatgcttcctcatcgtactcggcctgttcttccatcattctttgatactgcaaagcttccatctgcactgctgc 20552  T
Q  501 tttctcagcctgtaaccgtgtgat 524  Q
    ||||||||||||||||||||||||    
T  20551 tttctcagcctgtaaccgtgtgat 20528  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 24413615 - 24413662
Alignment:
Q  5 gtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtgttcgtat 52  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  24413615 gtgtcagtatgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtat 24413662  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 18964166 - 18964123
Alignment:
Q  14 tgtcagtgtccatgtcgtgtctggtgtccgtgttcgtatatgtg 57  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||    
T  18964166 tgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtatctgtg 18964123  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 926852 - 926890
Alignment:
Q  14 tgtcagtgtccatgtcgtgtctggtgtccgtgttcgtat 52  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  926852 tgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtat 926890  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 7938120 - 7938073
Alignment:
Q  5 gtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtgttcgtat 52  Q
    ||||| || ||||||||||||||||||||| ||||||||||| |||||    
T  7938120 gtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtat 7938073  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 16766701 - 16766654
Alignment:
Q  5 gtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtgttcgtat 52  Q
    ||||| || ||||||||||||||||||||| ||||||||||| |||||    
T  16766701 gtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtat 16766654  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 10335341 - 10335388
Alignment:
Q  5 gtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtgttcgtat 52  Q
    ||||| || ||||||||||| ||||||||| |||||||||||||||||    
T  10335341 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtat 10335388  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 18213100 - 18213146
Alignment:
Q  16 tcagtgtccatgtcgtgtctggtgtccgtgttcgtatatgtgtttca 62  Q
    ||||||||| ||||||||||||||| ||||||||||| |||| ||||    
T  18213100 tcagtgtccgtgtcgtgtctggtgttcgtgttcgtatctgtgcttca 18213146  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 13585311 - 13585271
Alignment:
Q  5 gtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtg 45  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  13585311 gtgtcggcatgtcagtgtcaatatcgtgtctggtgtccgtg 13585271  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Complemental strand, 33465070 - 33465028
Alignment:
Q  451 tgttcttccatcattctttgatactgcaaagcttccatctgca 493  Q
    |||||||||||||||||||| || ||||| |||||||||||||    
T  33465070 tgttcttccatcattctttggtattgcaatgcttccatctgca 33465028  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 27706241 - 27706279
Alignment:
Q  14 tgtcagtgtccatgtcgtgtctggtgtccgtgttcgtat 52  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  27706241 tgtcagtgtccctgtcgtgtctggtgtccgtgtccgtat 27706279  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 13484027 - 13483995
Alignment:
Q  15 gtcagtgtccatgtcgtgtctggtgtccgtgtt 47  Q
    |||||||||||||||||||| ||||||||||||    
T  13484027 gtcagtgtccatgtcgtgtccggtgtccgtgtt 13483995  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 15323160 - 15323126
Alignment:
Q  12 catgtcagtgtccatgtcgtgtctggtgtccgtgt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  15323160 catgtcagtgtccatgtcgtgtccggtgtccgtgt 15323126  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 23354707 - 23354752
Alignment:
Q  5 gtgtcagcatgtcagtgtccatgtcgtgtctggtgtccgtgttcgt 50  Q
    ||||||||||||| |||||| |||| |||| |||||||||||||||    
T  23354707 gtgtcagcatgtcggtgtccgtgtcatgtccggtgtccgtgttcgt 23354752  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18631467 - 18631511
Alignment:
Q  18 agtgtccatgtcgtgtctggtgtccgtgttcgtatatgtgtttca 62  Q
    ||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  18631467 agtgtccgtgtcgtgtccggtgtccgtgttcgtatctgtgcttca 18631511  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 34785046 - 34785094
Alignment:
Q  14 tgtcagtgtccatgtcgtgtctggtgtccgtgttcgtatatgtgtttca 62  Q
    ||||||||||| |||||||||||| |||||||| ||||| |||| ||||    
T  34785046 tgtcagtgtccgtgtcgtgtctggggtccgtgtccgtatctgtgcttca 34785094  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 15050 - 15018
Alignment:
Q  14 tgtcagtgtccatgtcgtgtctggtgtccgtgt 46  Q
    ||||||||||| |||||||||||||||||||||    
T  15050 tgtcagtgtccgtgtcgtgtctggtgtccgtgt 15018  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 8661 - 8629
Alignment:
Q  14 tgtcagtgtccatgtcgtgtctggtgtccgtgt 46  Q
    ||||||||||||||||||||| |||||||||||    
T  8661 tgtcagtgtccatgtcgtgtccggtgtccgtgt 8629  T

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