View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3858_high_1 (Length: 851)
Name: NF3858_high_1
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 767; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 8 - 835
Target Start/End: Original strand, 595442 - 596269
Alignment:
| Q |
8 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
595442 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaatt |
595541 |
T |
|
| Q |
108 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595542 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
595641 |
T |
|
| Q |
208 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595642 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
595741 |
T |
|
| Q |
308 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttacannnnnnnggtaaacaaatctcattctttatgattagtcaaagaaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595742 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaa |
595841 |
T |
|
| Q |
408 |
agatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggnnnnnnnnaatcgatattcaaatggatgcttataacaaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
595842 |
agatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggttttttttaatcgatattcaaatggatgcttataacaaca |
595941 |
T |
|
| Q |
508 |
aatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagaggatcacaatgaaaatgttatacaccattc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595942 |
aatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagaggatcacaatgaaaatgttatacaccattc |
596041 |
T |
|
| Q |
608 |
ccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
596042 |
ccttgcagccattttgaagtgttttatgcaaccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattt |
596141 |
T |
|
| Q |
708 |
tccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaataccgt |
807 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
596142 |
tccaatcgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaataccgt |
596241 |
T |
|
| Q |
808 |
tggatgaacaattggatataatattttt |
835 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
596242 |
tggatgaacaattggatataatattttt |
596269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 23962413 - 23962328
Alignment:
| Q |
259 |
ttaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgttcaatatcaatcaaatctt |
344 |
Q |
| |
|
||||||||||| |||| ||||||| ||| |||||| |||||| ||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
23962413 |
ttaaaggtatgtcattgtcttttcgtgcggtgttggaaacttcttcgaaggtagtagcttttgatgttcaatatcaatcaagtctt |
23962328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 369 - 835
Target Start/End: Original strand, 17373398 - 17373867
Alignment:
| Q |
369 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggn |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
17373398 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaagcatttcaagtagacaaatggaggt |
17373497 |
T |
|
| Q |
469 |
nnnnnnnaatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttg |
568 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
17373498 |
tttttttaatcgatattcaaatggatgcttatagcaacaaatgattgtaaaattcatattcatggtagttattatatgatgaataatttaaataaactcg |
17373597 |
T |
|
| Q |
569 |
ttgaaaagaggatcacaatgaaaatgtta---tacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggac |
665 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373598 |
ttgaaaagaggatcacaatgaaaatgttactatacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggac |
17373697 |
T |
|
| Q |
666 |
gacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacg |
765 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373698 |
gacacttatcaccgttcaaacatcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacg |
17373797 |
T |
|
| Q |
766 |
atgggggttaccaagccatgtaaaactgcaggagaataccgttggatgaacaattggatataatattttt |
835 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373798 |
atgggggttaccaagccatgtaaaactgcaggagaataccgttggatgaacaattggatataatattttt |
17373867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 481 - 589
Target Start/End: Complemental strand, 33006051 - 33005946
Alignment:
| Q |
481 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagagga |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
33006051 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcat---catggtagttattatatgatgaataattaaaataaacttgttgaaaagagga |
33005955 |
T |
|
| Q |
581 |
tcacaatga |
589 |
Q |
| |
|
||||||||| |
|
|
| T |
33005954 |
tcacaatga |
33005946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 476 - 589
Target Start/End: Complemental strand, 7632928 - 7632818
Alignment:
| Q |
476 |
aatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaa |
575 |
Q |
| |
|
||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
7632928 |
aatcgattttcaaatggttgcttatgacaa---atgattgtaaaattcatattcatggtggttattttatgatgaataattgaaataaacttgttgaaaa |
7632832 |
T |
|
| Q |
576 |
gaggatcacaatga |
589 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7632831 |
gaggatcacaatga |
7632818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
118 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
209 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||| |||||||||| |||| |||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 33006205 - 33006147
Alignment:
| Q |
372 |
aaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
431 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33006205 |
aaacaaatctcatt-tttatgattagtcaaagaaaaagatctcgttctttatgatattaa |
33006147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
115 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
206 |
Q |
| |
|
||||||||||||||||||| || | |||||| || |||||||||| |||| ||||| ||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 7633083 - 7633021
Alignment:
| Q |
369 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
431 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||| |||| |||| ||||||||||||||||| |
|
|
| T |
7633083 |
ggtaaacaaatcccatactttatgattagtaaaaataaaaaatctcgttctttatgatattaa |
7633021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 620 - 803
Target Start/End: Complemental strand, 6608887 - 6608704
Alignment:
| Q |
620 |
tttgaagtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaat |
719 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||| |||||| | | ||||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
6608887 |
tttgaagtgttgtacgcatccattaattggatacttttccaaggaacacacttttgatcgttcaaacagcctccatttacgtttattccccatgtgcaat |
6608788 |
T |
|
| Q |
720 |
ggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
803 |
Q |
| |
|
| ||| ||| ||| ||||||||||||||||| ||||| | ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
6608787 |
gattgcaattgtgacggttttggtcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggagaata |
6608704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 742 - 803
Target Start/End: Complemental strand, 6613356 - 6613295
Alignment:
| Q |
742 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
803 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
6613356 |
gtcgtaaatgtcaagataatgtcgatgcgggtttccaggccatgtaaaactgcagaagaata |
6613295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 808
Target Start/End: Complemental strand, 6632147 - 6631970
Alignment:
| Q |
631 |
ttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagcacctg |
730 |
Q |
| |
|
||||||||||||||||| |||||| ||||| | |||||||| ||||||||| ||||||| | ||||||| |||| ||||| | |||| || |
|
|
| T |
6632147 |
ttatgcatccattaatttgacactgttccacttataacacttatgtgtgttcaaacaacctccatctttgtttattgtccatctgcaacgatagcagttg |
6632048 |
T |
|
| Q |
731 |
tcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaataccgtt |
808 |
Q |
| |
|
||||| ||| ||||| ||||||| ||||||| | || ||||| ||| ||||||||||||||||| |||||| |||| |
|
|
| T |
6632047 |
tcacgaacttgatcgtagatgtcaagataatgaagttgagggtttccaggccatgtaaaactgcagaagaataacgtt |
6631970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 742 - 803
Target Start/End: Original strand, 9145868 - 9145929
Alignment:
| Q |
742 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
803 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |||||| |
|
|
| T |
9145868 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaata |
9145929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 742 - 803
Target Start/End: Complemental strand, 9180564 - 9180503
Alignment:
| Q |
742 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
803 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |||||| |
|
|
| T |
9180564 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaata |
9180503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 791
Target Start/End: Original strand, 22823229 - 22823281
Alignment:
| Q |
739 |
ttggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaac |
791 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||| |
|
|
| T |
22823229 |
ttggtcgtaaatgtcaagataatgtcgatgtgggtttccaggccatgtaaaac |
22823281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 505 - 589
Target Start/End: Original strand, 15290410 - 15290496
Alignment:
| Q |
505 |
acaaatgattgtaaaattcatattcatggtagttattat--atgataaataatttaaataaacttgttgaaaagaggatcacaatga |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15290410 |
acaaatgattgtaaaattcatattcatggtagtttttttttatgatgaataattgaaataaacttgttgaaaagaggatcacaatga |
15290496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 574
Target Start/End: Complemental strand, 26588056 - 26587991
Alignment:
| Q |
509 |
atgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaa |
574 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | || ||||||| | ||||||||||||||| |
|
|
| T |
26588056 |
atgattgtaaaattcatatacaaagtagttattatttcatgaataattgacataaacttgttgaaa |
26587991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 15290245 - 15290303
Alignment:
| Q |
373 |
aacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
431 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||| || ||||||||||||||||| |
|
|
| T |
15290245 |
aacaaatctcattctttatcattagtaaaaaaaaaaatactcgttctttatgatattaa |
15290303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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