View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_high_13 (Length: 324)
Name: NF3858_high_13
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 3852572 - 3852874
Alignment:
| Q |
15 |
agatttgtttcattttgaagacaaatgcttttgtgacttttaaacttcccacaaacttcttgttcttcttctttgacagcaacattgatcttccatttat |
114 |
Q |
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| T |
3852572 |
agatttgtttcattttgaagacaaatgcttttgtgacttttatacttcccacaaacttcttgttcttcttctttgacagcaacattgatcttccatttat |
3852671 |
T |
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| Q |
115 |
ctcttgatagcaacatgagggttatagcagcttcttcttcaggggaaaagttgaaaagtgaagtaacaggttctggttcagcttctgttagtggtgaatg |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852672 |
ctcttgatagcatcatgagggttatagcagcttcttcttcaggggaaaagttgaaaagtgaagtaacaggttctggttcagcttctgttagtggtgaatg |
3852771 |
T |
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| Q |
215 |
tgaatttgttaaagtctgtttaagcttcttttgtactgagttttggccaaaggtgagttttcttttttgagttgggttctttgactcggtttcactctct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852772 |
tgaatttgttaaagtctgtttaagcttcttttgtactgagttttggccaaaggtgagttttcttttttgagttgggttctttgactcggtttcactctct |
3852871 |
T |
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| Q |
315 |
ctg |
317 |
Q |
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||| |
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| T |
3852872 |
ctg |
3852874 |
T |
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