View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_high_16 (Length: 278)
Name: NF3858_high_16
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 11889303 - 11889089
Alignment:
| Q |
57 |
gaatggcctagacatagatgatacaaaaaa-ttaaaccatataaaggtcta--gtcattgaattgtactttatgaaatgtctatactttagtccaggcat |
153 |
Q |
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| T |
11889303 |
gaatggcctatgcatagatgatacaaaaaaattaaaccatataaaggtctatagtcattgaattgtactttatgaaatttctatactttagtccaggcat |
11889204 |
T |
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| Q |
154 |
tcaaatctaacaccagtctattgcagttgtctttctattgtattcatctgattcattatatcaaattccaatggtaatccacaaatattgtaaactcttt |
253 |
Q |
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| T |
11889203 |
tcaaatctaacaccagtctattgcagttgtctttctattgtattcatctgattcattatatcaaattccaatggtaatccacaaatattgtaaactcttt |
11889104 |
T |
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| Q |
254 |
gtgaaggttttcatc |
268 |
Q |
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||||||||||||||| |
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| T |
11889103 |
gtgaaggttttcatc |
11889089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 11895856 - 11895576
Alignment:
| Q |
1 |
atgtgtttataggtgttgaaaactaaagtgtggaggacaagcccctattaagttaggaatggcctagacatagatgatacaaaaaattaaaccatataaa |
100 |
Q |
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| T |
11895856 |
atgtgtttataggtgttgaaaactaaagtgtggaggacaagcccctattaagttaggaatggcctagacatagatgat--aaaaaattaaaccatataaa |
11895759 |
T |
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| Q |
101 |
ggtc--tagtcattgaattgtactttatgaaatgtctatactttag--------tccaggcattcaaatctaacaccagtctattgcagttgtctttcta |
190 |
Q |
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| T |
11895758 |
ggtctatagtcattgaattgtactttatgaaatttctatgcattagttcagggctccaggcattaaaatctaacaccagtttattgcaattgtctttcta |
11895659 |
T |
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| Q |
191 |
ttg-----tattca-tctgattcattatatcaaattccaatggtaatccacaaatattgtaaactctttgtgaaggttttcatc |
268 |
Q |
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| T |
11895658 |
ttgtattatattcacggtgattaattatatcaatttgctatgctaatccac-atcattgttaactctttgtgaaggttttcatc |
11895576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 11901522 - 11901242
Alignment:
| Q |
1 |
atgtgtttataggtgttgaaaactaaagtgtggaggacaagcccctattaagttaggaatggcctagacatagatgatacaaaaaattaaaccatataaa |
100 |
Q |
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| T |
11901522 |
atgtgtttataggtgttgaaaactaaagtgtggaggacaagcccctattaagttaggaatggcctagacatagatgat--aaaaaattaaaccatataaa |
11901425 |
T |
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| Q |
101 |
ggtc--tagtcattgaattgtactttatgaaatgtctatactttag--------tccaggcattcaaatctaacaccagtctattgcagttgtctttcta |
190 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| | |||| |||||||||| ||||||||||||||| ||||||| ||||||||||| |
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| T |
11901424 |
ggtctatagtcattgaattgtactttatgaaatttctatgcattagttcagggctccaggcattaaaatctaacaccagtttattgcaattgtctttcta |
11901325 |
T |
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| Q |
191 |
ttg-----tattca-tctgattcattatatcaaattccaatggtaatccacaaatattgtaaactctttgtgaaggttttcatc |
268 |
Q |
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||| |||||| ||||| |||||||||| || | ||| |||||||| | ||||| ||||||||||||||||||||||| |
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| T |
11901324 |
ttgtattatattcacggtgattaattatatcaatttgctatgctaatccac-atcattgttaactctttgtgaaggttttcatc |
11901242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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