View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_high_18 (Length: 226)
Name: NF3858_high_18
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34290001 - 34290220
Alignment:
| Q |
1 |
tttattttcatcttcttcatctctactccattcaattatattctcaatcaacgcacaagatttaacttccagtttctcaagatttgtgatttctcttgca |
100 |
Q |
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| T |
34290001 |
tttattttcatcttcttcatctctactccattcaattatattctcaatcaacgcacaagatttaacttccagtttctcaagatttgtgatttctcttgca |
34290100 |
T |
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| Q |
101 |
atgacagaaaagtgaatacatgttggagttcgaatgtcggacaccccacttattcaccctaaaaaggtaaacttctacttagctaaataaatgaacaaaa |
200 |
Q |
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| T |
34290101 |
atgacagaaaagtgaatacatgttggagttcgaatgtcggacaccccacttattcaccctaaaaaggtaaatttctacttagctaaataaatgaacaaaa |
34290200 |
T |
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| Q |
201 |
taattcaacagtataatcta |
220 |
Q |
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| T |
34290201 |
taattcaacagtagaatcta |
34290220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 31917901 - 31917867
Alignment:
| Q |
137 |
tcggacaccccacttattcaccctaaaaaggtaaa |
171 |
Q |
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| T |
31917901 |
tcggacaccccacttattcaccttaaaaaggtaaa |
31917867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 31902238 - 31902205
Alignment:
| Q |
138 |
cggacaccccacttattcaccctaaaaaggtaaa |
171 |
Q |
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| T |
31902238 |
cggacaccccacttattcaccttaaaaaggtaaa |
31902205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 51975134 - 51975163
Alignment:
| Q |
129 |
ttcgaatgtcggacaccccacttattcacc |
158 |
Q |
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| T |
51975134 |
ttcgaatgtcggacaccccacttattcacc |
51975163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 50724413 - 50724457
Alignment:
| Q |
122 |
gttggagttcgaatgtcggacaccccacttattcaccctaaaaag |
166 |
Q |
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| T |
50724413 |
gttggggttcgaacctcggacaccccacttattcaccttaaaaag |
50724457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 50788435 - 50788391
Alignment:
| Q |
122 |
gttggagttcgaatgtcggacaccccacttattcaccctaaaaag |
166 |
Q |
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| T |
50788435 |
gttggggttcgaacctcggacaccccacttattcaccttaaaaag |
50788391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 15894051 - 15894123
Alignment:
| Q |
37 |
tatattctcaatcaacgcacaagatttaacttccagtttctcaagatttgtgatttctcttgcaatgacagaa |
109 |
Q |
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| T |
15894051 |
tatattctcaatcaacttacaagaacttacttccaatctctcaagatttgtgactgctcttacaataacagaa |
15894123 |
T |
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