View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_high_7 (Length: 492)
Name: NF3858_high_7
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Original strand, 48430282 - 48430738
Alignment:
| Q |
14 |
tactagacacaaagcagtgtatgaacagaccttttttgaacaagagtgtatgaacagtcctttaaatgggacatctaaaaactaataggagttatnnnnn |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48430282 |
tactagacacaaagcagtgtatgaacagaccttttttgaacaagagtgtatgaacagtcctttaaatgggacatctaaaaaccaataggagttataaaaa |
48430381 |
T |
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| Q |
114 |
nntaaaatatactaatgaaggaaagaagacaacggggttcacggtgggagctcctgtgtaaaatgcattggcaaacgaccccatcagttgactattctga |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48430382 |
aataaaatatactaatgaaggaaagaagacgacggggttcacggtgggagctcctgtgtaaaatgcattggtaaacgaccccatcagttgactattctga |
48430481 |
T |
|
| Q |
214 |
caccctttatgtaactcagcctccaactgtttgcatctctccaaataattcatcctcaagttcccttgcactagccaaaattgcctttcccctggccacc |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48430482 |
cacccttcatgtaactcagcctccaactgtttgcatctctccaaataattcagcctcaagttcccttgcactagccaaaattgcctttcccctggccacc |
48430581 |
T |
|
| Q |
314 |
tgttgatgttgaagaattcaaatatgcacagagaaaattgaatcaaaagcattgataaagctccataaactttgttaagatttccagaaaaacttgccta |
413 |
Q |
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| T |
48430582 |
tgttgatgttgaagaattcaaatatgcacagagaaaattgaatcaaaagcattgataaagctccataaactttgttaagatttccagaaaaacttgcctg |
48430681 |
T |
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| Q |
414 |
ctcttcttcatcaatttggaaacgcctacaacccaggttacaaagactatgatatagaaa |
473 |
Q |
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| T |
48430682 |
ctcttct---tcaatttggaaacgcgtacaacccaggttacaaagactatgatatagaaa |
48430738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Complemental strand, 34114528 - 34114494
Alignment:
| Q |
378 |
ataaactttgttaagatttccagaaaaacttgcct |
412 |
Q |
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| T |
34114528 |
ataaactttgttaacatttccagaaaaacttgcct |
34114494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 34148710 - 34148677
Alignment:
| Q |
379 |
taaactttgttaagatttccagaaaaacttgcct |
412 |
Q |
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| T |
34148710 |
taaactttgttaacatttccagaaaaacttgcct |
34148677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 34161326 - 34161293
Alignment:
| Q |
379 |
taaactttgttaagatttccagaaaaacttgcct |
412 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
34161326 |
taaactttgttaacatttccagaaaaacttgcct |
34161293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 52805622 - 52805684
Alignment:
| Q |
351 |
ttgaatcaaaagcattgataaa-gctccataaactttgttaagatttccagaa-aaacttgcc |
411 |
Q |
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| T |
52805622 |
ttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaagaaacttgcc |
52805684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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