View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_high_8 (Length: 486)
Name: NF3858_high_8
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 41209197 - 41209507
Alignment:
| Q |
17 |
gtatctacacaaaaatttcggttccaaacatttattgtccaatattttcacacgatacaatcaatacgagtttctctctttaacctataaaatcacaaca |
116 |
Q |
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| T |
41209197 |
gtatctacacaaaaatttcggttctaaacatttattgtccaatattttcacacgatacaatcaatacgagtttctctctttaacctataaaatcacaaca |
41209296 |
T |
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| Q |
117 |
attgatgcgttttcttttcattgcatcacaattttcttaattcatcaacacacttcactctttcactgttttattgttttgatcaactatgaatgcttta |
216 |
Q |
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| T |
41209297 |
attgatgcgttttcttttcatcgcatcacaattttcttaattcatcaacacacttca--------ctgttttattgttttgatcaactatgaatgcttta |
41209388 |
T |
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| Q |
217 |
gcagccacaaaccgtaattttcaacgtgcatctcgtatccttggtttagattccaagcttgagaagagtcttctcattccattcagagaaatcaaagtat |
316 |
Q |
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| T |
41209389 |
gcagccacaaaccgtaattttcaacgtgcatctcgtatccttggtttagattccaagcttgagaagagtcttctcattccatttagagaaatcaaagtat |
41209488 |
T |
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| Q |
317 |
gaatgttgttgatcaatcc |
335 |
Q |
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| T |
41209489 |
gaatgttgttgatcaatcc |
41209507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 436 - 479
Target Start/End: Original strand, 41209606 - 41209649
Alignment:
| Q |
436 |
atgtggggtgttttgatattgataagggtttctgattttctctg |
479 |
Q |
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| T |
41209606 |
atgtggggtgtgttgaaattgataagggtttctgattttctctg |
41209649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 4275158 - 4275067
Alignment:
| Q |
220 |
gccacaaaccgtaattttcaacgtgcatctcgtatccttggtttagattccaagcttgagaagagtcttctcattccattcagagaaatcaa |
311 |
Q |
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| T |
4275158 |
gccaccaaccgtaatttccaacgtgcatctcgaatccttggtttggattccaaacttgagaaaagccttctcattccttacagagaaatcaa |
4275067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 33196322 - 33196368
Alignment:
| Q |
265 |
gattccaagcttgagaagagtcttctcattccattcagagaaatcaa |
311 |
Q |
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| T |
33196322 |
gattccaagcttgagaaaagtttacttattccattcagagaaatcaa |
33196368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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