View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_low_10 (Length: 430)
Name: NF3858_low_10
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 37511531 - 37511866
Alignment:
| Q |
18 |
agattaatcaaactttgagaaatttgctcacaaggaagaagcaacaagaaagcaggggtttacacatgctggattgggatgggtttgatgaaatgctatt |
117 |
Q |
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| T |
37511531 |
agattaatcaaactttgagaaatttgctcacaaggaagaagcaacaagaaagcaggggtttatacatgctggattgggatgggtttgatgaaatgctatt |
37511630 |
T |
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| Q |
118 |
atcaaactaatcaactcttatcattaattcggttgaatatcaactcatatatagtagcatatcttaagagaaaatgaaaactaaatcaaaccaatataat |
217 |
Q |
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| T |
37511631 |
atcaaactaatcaactcttatcattaattcggttgaatatcaactcatatatagtagcatatcttaagagaaaatgaaaactaaatcaaaccaatataa- |
37511729 |
T |
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| Q |
218 |
catgaattacgtgtggggtggatagggctcatgaaacctcaagaaatattctaaaaaatataactaaatgaaaacatttctggtgcttaacatttcaaaa |
317 |
Q |
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| T |
37511730 |
-------------tggggtggatagggctcatgaaacctcaagaaatattctaaaaaatataactaaatgaaaacatttctggtgcttaacatttcaaaa |
37511816 |
T |
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| Q |
318 |
accataaaattcaaagcacaaatttaaggaagaacccctgcattatttcc |
367 |
Q |
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| T |
37511817 |
accataaaattcaaagcacaaatttaaggaagaacccctgcattatttcc |
37511866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 37511882 - 37511917
Alignment:
| Q |
382 |
ttatgaaccacatttcttataacgtttccgcatttc |
417 |
Q |
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| T |
37511882 |
ttatgaaccacacttcttataacgtttccgcatttc |
37511917 |
T |
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