View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3858_low_12 (Length: 348)

Name: NF3858_low_12
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3858_low_12
NF3858_low_12
[»] chr8 (9 HSPs)
chr8 (22-336)||(33959406-33959720)
chr8 (171-336)||(33990235-33990400)
chr8 (22-166)||(33952276-33952420)
chr8 (169-336)||(33950759-33950932)
chr8 (161-294)||(33973450-33973583)
chr8 (22-166)||(33974876-33975020)
chr8 (22-153)||(33991809-33991940)
chr8 (42-128)||(33941720-33941806)
chr8 (42-153)||(33912956-33913067)
[»] scaffold0391 (2 HSPs)
scaffold0391 (22-153)||(11880-12011)
scaffold0391 (162-264)||(10335-10437)
[»] chr7 (1 HSPs)
chr7 (30-153)||(8278342-8278464)


Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 33959720 - 33959406
Alignment:
Q  22 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33959720 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtg 33959621  T
Q  122 atagttctttccctatcgttcgccacaagtcacgaggccgattttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcagcatc 221  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33959620 ctagttctttccctatctttcgccacaagtcacgaggccgattttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatc 33959521  T
Q  222 atttacaataagagattggttctcatcgacaacataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagacta 321  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33959520 atttacaataagagattggttctcatcaacaacataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagacta 33959421  T
Q  322 tttatttcctctctg 336  Q
    |||||||||||||||    
T  33959420 tttatttcctctctg 33959406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 171 - 336
Target Start/End: Complemental strand, 33990400 - 33990235
Alignment:
Q  171 gttgagaagctcaagaatttctcttggcttataaagtgtttcttcagcatcatttacaataagagattggttctcatcgacaacataggaatcattctca 270  Q
    |||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33990400 gttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctca 33990301  T
Q  271 gaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctg 336  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| | || ||||| ||||||    
T  33990300 gaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctg 33990235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 33952420 - 33952276
Alignment:
Q  22 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtg 121  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| |  |||||||||||||||| ||||||||||||||    
T  33952420 aagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattagaatcaagaatagaatgaccttgtg 33952321  T
Q  122 atagttctttccctatcgttcgccacaagtcacgaggccgatttt 166  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  33952320 atagttctttccctatctttcgccacatgtcacgaggccgatttt 33952276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 169 - 336
Target Start/End: Complemental strand, 33950932 - 33950759
Alignment:
Q  169 tggttgagaagctcaagaatttctcttggcttataaagtgtttcttcagcatcatttacaataagagattggttctcatcgacaacatag------gaat 262  Q
    |||||||||||||||||||||||||| | ||||||||| || |||||| ||||||||||| |||||||||||||||| || |||||||||      ||||    
T  33950932 tggttgagaagctcaagaatttctctggtcttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagccataggaat 33950833  T
Q  263 cattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctg 336  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  33950832 cattctcagaagaacatgtacatgcactttctcctgcatcattttcttctatcagactatttatttcttctctg 33950759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 33973583 - 33973450
Alignment:
Q  161 gattttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcagcatcatttacaataagagattggttctcatcgacaacatagga 260  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||||| |||||  ||||||||||||||||||||||||||||||| ||||| |||||    
T  33973583 gattttcgtggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtagga 33973484  T
Q  261 atcattctcagaagaacatttgcatgcactttct 294  Q
    |||||||||| ||||| |||||||||||||||||    
T  33973483 atcattctcaaaagaagatttgcatgcactttct 33973450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 33975020 - 33974876
Alignment:
Q  22 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtg 121  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||  |||||||||||||    
T  33975020 aagcactccatgatttttggattatcttccaaaacatcgaagatcttttggaggcgagtaagtaattcggtattagaatcaagaattgaatgaccttgtg 33974921  T
Q  122 atagttctttccctatcgttcgccacaagtcacgaggccgatttt 166  Q
    ||||||| ||| ||||| |  ||||||||||| ||||||||||||    
T  33974920 atagttccttcactatcttatgccacaagtcatgaggccgatttt 33974876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 33991940 - 33991809
Alignment:
Q  22 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  33991940 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattcggtattagaatcaagaatagaatgaccttgtg 33991841  T
Q  122 atagttctttccctatcgttcgccacaagtca 153  Q
    | | |||  || ||||| | ||||||||||||    
T  33991840 acaattccatcactatcttacgccacaagtca 33991809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 33941806 - 33941720
Alignment:
Q  42 attatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtgatagttc 128  Q
    |||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||| | |||| ||||| |||| |||||    
T  33941806 attatcttccaaaacatccaaaatcttttggaggcgaataagtaattcagtattagaatcaagtatagaacgacctcgtgaaagttc 33941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 33913067 - 33912956
Alignment:
Q  42 attatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtgatagttctttccctatcgtt 141  Q
    |||||||||||||||||| |||| |||| |||||||| |||||||||  ||| |||||||||| | |||| ||||||| || ||||| ||| | ||| ||    
T  33913067 attatcttccaaaacatccaagacctttcggaggcgagtaagtaattcagtactagaatcaagtatagaacgaccttgagaaagttccttcacaatcttt 33912968  T
Q  142 cgccacaagtca 153  Q
      ||||||||||    
T  33912967 tcccacaagtca 33912956  T

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Target: scaffold0391 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 12011 - 11880
Alignment:
Q  22 aagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtg 121  Q
    ||||||||| ||||| |  |||||||||| ||||||||||||||||||||||||||| ||||||| |  |||||||||||||| | ||||||||||||||    
T  12011 aagcactccttgattatgagattatcttcgaaaacatcaaagatcttttggaggcgagtaagtaactcagtattagaatcaagtatagaatgaccttgtg 11912  T
Q  122 atagttctttccctatcgttcgccacaagtca 153  Q
    | ||||| ||| ||||| ||  ||||||||||    
T  11911 acagttccttcactatctttgtccacaagtca 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 10437 - 10335
Alignment:
Q  162 attttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcagcatcatttacaataagagattggttctcatcgacaacataggaa 261  Q
    |||||| | ||| ||||| |||||||||||||| | ||| |||||||| |||| | ||||||||||  ||||||||||||| ||||| || |||||||||    
T  10437 attttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagattggttatcatcaacgacataggaa 10338  T
Q  262 tca 264  Q
    |||    
T  10337 tca 10335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 8278342 - 8278464
Alignment:
Q  30 catgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtgatagttct 129  Q
    ||||||||| ||||||||||| |||||||| || ||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||| |||||     
T  8278342 catgattgtgggattatcttctaaaacatcgaatatcttttggaggcgagtaagtaattcggtattagaatcaagaacagaa-gacctcgtgacagttcc 8278440  T
Q  130 ttccctatcgttcgccacaagtca 153  Q
     || ||||| | ||||||||||||    
T  8278441 gtcactatcttacgccacaagtca 8278464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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