View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_low_13 (Length: 343)
Name: NF3858_low_13
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 48430434 - 48430738
Alignment:
| Q |
17 |
cctgtgtaaaatgcattggcaaacgaccccatcagttgactattctgacaccctttatgtaactcagcctccaactgtttgcatctctccaaataattca |
116 |
Q |
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| T |
48430434 |
cctgtgtaaaatgcattggtaaacgaccccatcagttgactattctgacacccttcatgtaactcagcctccaactgtttgcatctctccaaataattca |
48430533 |
T |
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| Q |
117 |
tcctcaagttcccttgcactagccaaaattgcctttcccctggccacctgttgatgttgaagaattcaaatatgcacagagaaaattgaatcaaaagcat |
216 |
Q |
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| T |
48430534 |
gcctcaagttcccttgcactagccaaaattgcctttcccctggccacctgttgatgttgaagaattcaaatatgcacagagaaaattgaatcaaaagcat |
48430633 |
T |
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| Q |
217 |
tgataaagctccataaactttgttaagatttccagaaaaacttgcctactcttcttcatcaatttggaaacgcctacaacccaggttacaaagactatga |
316 |
Q |
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| T |
48430634 |
tgataaagctccataaactttgttaagatttccagaaaaacttgcctgctcttct---tcaatttggaaacgcgtacaacccaggttacaaagactatga |
48430730 |
T |
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| Q |
317 |
tatagaaa |
324 |
Q |
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|||||||| |
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| T |
48430731 |
tatagaaa |
48430738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 34114528 - 34114494
Alignment:
| Q |
229 |
ataaactttgttaagatttccagaaaaacttgcct |
263 |
Q |
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| T |
34114528 |
ataaactttgttaacatttccagaaaaacttgcct |
34114494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 34148710 - 34148677
Alignment:
| Q |
230 |
taaactttgttaagatttccagaaaaacttgcct |
263 |
Q |
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| T |
34148710 |
taaactttgttaacatttccagaaaaacttgcct |
34148677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 34161326 - 34161293
Alignment:
| Q |
230 |
taaactttgttaagatttccagaaaaacttgcct |
263 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
34161326 |
taaactttgttaacatttccagaaaaacttgcct |
34161293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 52805622 - 52805684
Alignment:
| Q |
202 |
ttgaatcaaaagcattgataaa-gctccataaactttgttaagatttccagaa-aaacttgcc |
262 |
Q |
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| T |
52805622 |
ttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaagaaacttgcc |
52805684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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