View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_low_16 (Length: 298)
Name: NF3858_low_16
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 33732823 - 33732611
Alignment:
| Q |
68 |
tttcaatacatatttttgttgcaattattatgatatagtaagggtaaggtatataaaattaatttgattgatgagtttaaacaaataatgaattttagct |
167 |
Q |
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| T |
33732823 |
tttcaatacatatttttgttgcaattattatgatatagtaagggtaaggtatataaaatgaatttgattgatgagtttaaacaaataatgaattttagct |
33732724 |
T |
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| Q |
168 |
agaaagagagaatagaatataaaaaagaaagtcaaataaagattagaaaccaaccaaccattaccaccatagtggtatgtatccatgaagattggtatca |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33732723 |
agaaagagagaatagaatataaaaaagaaagtcaaataaagattagaaaccaaccaaccatt---accatagtggtatgtatccatgaagattggtatca |
33732627 |
T |
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| Q |
268 |
acctcattgtcaattc |
283 |
Q |
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|||||||||||||||| |
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| T |
33732626 |
acctcattgtcaattc |
33732611 |
T |
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