View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_low_22 (Length: 214)
Name: NF3858_low_22
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 10011081 - 10010884
Alignment:
| Q |
1 |
acaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatggaaggtgttcgttttgtttacacctgttcttatttgtttatcttt |
100 |
Q |
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| T |
10011081 |
acaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatggaaggtgttcgttttgtttacacctgttcttatttggttatcttt |
10010982 |
T |
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| Q |
101 |
tgtttacatattttcctaggttcaacaggttttaaaattgtttttctgaatattagagtatctgcgcgttgtgcgtgatggctgttgtcagtgagaac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
10010981 |
tgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattagagtatctgagcgttgtgcgtgacggctgttgtcagtgagaac |
10010884 |
T |
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