View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3858_low_4 (Length: 583)
Name: NF3858_low_4
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_low_4 |
 | |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Original strand, 895073 - 895623
Alignment:
| Q |
17 |
tatactacctggaacattcacagtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcgagattcggaagagtgagataaaatgat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
895073 |
tatactacctggaacattcacagtttcataagctgactctaagaactctatttccgaggaaatagagtcgtcgagattcagaagagtgagataaaatgat |
895172 |
T |
|
| Q |
117 |
gttggaacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaa |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
895173 |
gttggaacagctcctgaggcatagaaaaggtaagaagacaagttaaattgtttggcaacttcatatgcatctgttgaaaatatactgaagattaaagaaa |
895272 |
T |
|
| Q |
217 |
caaggtaagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttg |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
895273 |
caaggttagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttg |
895372 |
T |
|
| Q |
317 |
ttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
895373 |
ttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggagaaagtgttgga |
895472 |
T |
|
| Q |
417 |
atgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatag |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895473 |
atgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatag |
895572 |
T |
|
| Q |
517 |
caatgcatgattttttgttcataatgtgcataaaagttgagataagtgatt |
567 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
895573 |
caatgcatggttttttgttcataatgtgcataaaagttgagataagtgatt |
895623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 23 - 567
Target Start/End: Complemental strand, 905564 - 905017
Alignment:
| Q |
23 |
acctggaacattcacagtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcgagattcggaagagtgagataaaatgatgttgga |
122 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||| | ||||| || | |
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|
| T |
905564 |
acctggaatattcacagtttcataagctgattctaagaattctgcttcagaggaaacagagtcgtcgagattcggaagagtgagaaagaatgacaatgaa |
905465 |
T |
|
| Q |
123 |
acagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggt |
222 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||| |||| || ||||||||||||||||||| |
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|
| T |
905464 |
agagcacccgaggcatagaaaaggtaagaagataaattgaattgtttagcaacttcatgtgcatcggttgagaatagaccaaagattaaagaaacaaggt |
905365 |
T |
|
| Q |
223 |
aagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctt---tgttg |
319 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| | | | | | |
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|
| T |
905364 |
tagttttggaaatgagtgattttacttcttcttgtagaaatggaatagaatgtttcacaatgagtttcatttgtgttgcaggttcaagattaatctctgg |
905265 |
T |
|
| Q |
320 |
aatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatg |
419 |
Q |
| |
|
|| | ||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
905264 |
aaggtgttttacttgaggaagaacaatgaattctatgtttgggggaagagtgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatg |
905165 |
T |
|
| Q |
420 |
atgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
905164 |
atgaatgtgacaatgaattcattgtgttgttgaagtaattgtttggcaaattcaacttgtggaattaaatggctaagtccaggggaaggaaccatagcaa |
905065 |
T |
|
| Q |
520 |
tgcatgattttttgttcataatgtgcataaaagttgagataagtgatt |
567 |
Q |
| |
|
|| ||| |||||| ||||| ||||| ||| |||||||||||||||||| |
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|
| T |
905064 |
tgtatgtttttttattcatgatgtgtatagaagttgagataagtgatt |
905017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 122 - 525
Target Start/End: Original strand, 8295121 - 8295530
Alignment:
| Q |
122 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
221 |
Q |
| |
|
||||||||| |||| | |||||||||| || | | |||||| ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |
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|
| T |
8295121 |
aacagctcctgaggaaaagaaaaggtatgataaaaggttgaaatgtttcgcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactagg |
8295220 |
T |
|
| Q |
222 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
321 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| | ||||||||||||||| |||||||| ||||||||||| |||| |||||||||| | | ||| ||| |
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|
| T |
8295221 |
cgagtttttgaaaggagtgattttacttcttcataaagaaatggaatagagtgtttcactatgagtttcatctgtgttgcaggatcaagattatgtggaa |
8295320 |
T |
|
| Q |
322 |
tatttt------ttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgg |
415 |
Q |
| |
|
| || | ||||| ||||||| |||||||| ||||||||||||||| ||||||||| |||||| |||||||| || |||| |||||| || |
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|
| T |
8295321 |
ggtcttcaatgttgacttggggaagaacaatgaagttcatgtttggtggaagagtgttcaagatggattgcatggaaggagttagtggaccaagtgtggg |
8295420 |
T |
|
| Q |
416 |
aatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccata |
515 |
Q |
| |
|
||||| |||||||| | | |||||||||||| ||| |||||| |||| ||||| |||||| ||||||| |||||||| | |||||| |||||||||||| |
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|
| T |
8295421 |
aatgaggaatgtgatatggtattcattgtgattttggagtaatagtttagcaaactcaactagtggaatcaaatggctcaatccaggtgaaggaaccata |
8295520 |
T |
|
| Q |
516 |
gcaatgcatg |
525 |
Q |
| |
|
|||||||||| |
|
|
| T |
8295521 |
gcaatgcatg |
8295530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 122 - 525
Target Start/End: Complemental strand, 33256634 - 33256225
Alignment:
| Q |
122 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
221 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
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|
| T |
33256634 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
33256535 |
T |
|
| Q |
222 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
321 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| || ||| ||| | | ||| ||| |
|
|
| T |
33256534 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtgttgaaggttcaagattatgtggaa |
33256435 |
T |
|
| Q |
322 |
tatttt------ttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgg |
415 |
Q |
| |
|
| || | ||||| ||||||| | |||||| |||||||||||||| ||||||||| | |||||| |||||||| || |||| |||||| || |
|
|
| T |
33256434 |
ggtcttcaatgttgacttggggaagaacagtgaagttcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtggg |
33256335 |
T |
|
| Q |
416 |
aatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccata |
515 |
Q |
| |
|
||||| |||||||| | | | |||||||||||||| |||||| |||| ||||| |||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
33256334 |
aatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaactcaacttgtggaatcaaatggctcaatccaggtgaaggaaccata |
33256235 |
T |
|
| Q |
516 |
gcaatgcatg |
525 |
Q |
| |
|
|||||||||| |
|
|
| T |
33256234 |
gcaatgcatg |
33256225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 6440567 - 6440492
Alignment:
| Q |
370 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
445 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||| ||| || |||||||| || ||||||||||||||| |||||||| |
|
|
| T |
6440567 |
tgttcaatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtg |
6440492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 122 - 525
Target Start/End: Complemental strand, 752 - 343
Alignment:
| Q |
122 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
221 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
|
|
| T |
752 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
653 |
T |
|
| Q |
222 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
321 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| || ||| ||| | | ||| ||| |
|
|
| T |
652 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtgttgaaggttcaagattatgtggaa |
553 |
T |
|
| Q |
322 |
tatttt------ttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgg |
415 |
Q |
| |
|
| || | ||||| ||||||| | |||||| |||||||||||||| ||||||||| | |||||| |||||||| || |||| |||||| || |
|
|
| T |
552 |
ggtcttcaatgttgacttggggaagaacagtgaagttcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtggg |
453 |
T |
|
| Q |
416 |
aatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccata |
515 |
Q |
| |
|
||||| |||||||| | | | |||||||||||||| |||||| |||| ||||| |||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
452 |
aatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaactcaacttgtggaatcaaatggctcaatccaggtgaaggaaccata |
353 |
T |
|
| Q |
516 |
gcaatgcatg |
525 |
Q |
| |
|
|||||||||| |
|
|
| T |
352 |
gcaatgcatg |
343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 34765242 - 34765317
Alignment:
| Q |
370 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
445 |
Q |
| |
|
|||||||| ||| ||||||||| |||| |||||| ||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
34765242 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtg |
34765317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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