View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3858_low_5 (Length: 564)

Name: NF3858_low_5
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3858_low_5
NF3858_low_5
[»] chr7 (17 HSPs)
chr7 (132-541)||(46442822-46443218)
chr7 (6-114)||(46443246-46443354)
chr7 (425-506)||(38505185-38505266)
chr7 (425-506)||(33871801-33871882)
chr7 (438-506)||(4058000-4058068)
chr7 (425-506)||(2826089-2826170)
chr7 (450-506)||(30081131-30081187)
chr7 (442-506)||(35264749-35264813)
chr7 (425-506)||(16805408-16805489)
chr7 (425-506)||(32650232-32650313)
chr7 (425-506)||(42254127-42254208)
chr7 (454-506)||(6746451-6746503)
chr7 (430-466)||(38470845-38470881)
chr7 (447-506)||(43348102-43348161)
chr7 (426-488)||(13044325-13044387)
chr7 (448-506)||(15748813-15748871)
chr7 (425-506)||(23465841-23465922)
[»] chr3 (18 HSPs)
chr3 (416-506)||(47359473-47359563)
chr3 (425-506)||(3537365-3537446)
chr3 (450-506)||(517498-517554)
chr3 (442-506)||(50534965-50535029)
chr3 (430-488)||(34280664-34280722)
chr3 (450-503)||(49183847-49183900)
chr3 (424-506)||(50948365-50948448)
chr3 (425-506)||(38639738-38639819)
chr3 (425-506)||(44400858-44400939)
chr3 (424-506)||(33944479-33944562)
chr3 (425-506)||(5939622-5939703)
chr3 (425-506)||(37673994-37674075)
chr3 (425-506)||(48908733-48908814)
chr3 (442-506)||(25753970-25754034)
chr3 (450-503)||(33900581-33900634)
chr3 (431-491)||(16883884-16883943)
chr3 (423-479)||(35989269-35989325)
chr3 (450-498)||(51686673-51686721)
[»] scaffold0263 (1 HSPs)
scaffold0263 (431-506)||(5832-5906)
[»] chr8 (15 HSPs)
chr8 (436-506)||(34336189-34336259)
chr8 (424-506)||(29584333-29584416)
chr8 (425-506)||(36837339-36837420)
chr8 (442-502)||(13369775-13369835)
chr8 (425-503)||(79461-79540)
chr8 (405-488)||(13227887-13227970)
chr8 (455-506)||(43239885-43239936)
chr8 (437-506)||(8228720-8228789)
chr8 (425-506)||(41865477-41865557)
chr8 (438-506)||(21173712-21173780)
chr8 (443-504)||(12506055-12506116)
chr8 (458-503)||(4873122-4873167)
chr8 (437-506)||(6943318-6943387)
chr8 (425-506)||(23932389-23932470)
chr8 (443-506)||(26772512-26772575)
[»] chr1 (23 HSPs)
chr1 (424-506)||(36887028-36887111)
chr1 (405-506)||(5584664-5584765)
chr1 (442-499)||(38795270-38795327)
chr1 (425-506)||(52067988-52068069)
chr1 (438-506)||(69890-69958)
chr1 (438-506)||(666436-666504)
chr1 (431-506)||(24369110-24369185)
chr1 (436-488)||(4204631-4204683)
chr1 (424-487)||(14439748-14439812)
chr1 (436-506)||(33324783-33324853)
chr1 (425-506)||(34154179-34154260)
chr1 (425-506)||(37649457-37649538)
chr1 (443-497)||(37875611-37875665)
chr1 (425-506)||(2909276-2909357)
chr1 (425-506)||(17760326-17760407)
chr1 (455-506)||(27255358-27255409)
chr1 (443-506)||(41817158-41817221)
chr1 (443-506)||(46001725-46001788)
chr1 (443-506)||(32511480-32511544)
chr1 (442-508)||(34749731-34749797)
chr1 (416-485)||(6570651-6570719)
chr1 (443-488)||(29092260-29092305)
chr1 (405-433)||(8156167-8156195)
[»] chr4 (16 HSPs)
chr4 (425-506)||(38136675-38136756)
chr4 (424-505)||(12708673-12708755)
chr4 (426-506)||(49667957-49668036)
chr4 (442-506)||(30198629-30198693)
chr4 (431-506)||(22165613-22165690)
chr4 (425-506)||(29114084-29114165)
chr4 (450-506)||(368217-368273)
chr4 (443-506)||(16423072-16423135)
chr4 (442-488)||(16461586-16461632)
chr4 (453-506)||(55510038-55510090)
chr4 (430-506)||(41708964-41709040)
chr4 (427-502)||(28880154-28880229)
chr4 (442-501)||(50784216-50784275)
chr4 (454-506)||(20896279-20896331)
chr4 (426-498)||(50494496-50494568)
chr4 (455-499)||(55058582-55058626)
[»] chr5 (10 HSPs)
chr5 (442-506)||(14569908-14569972)
chr5 (436-506)||(38568231-38568301)
chr5 (405-506)||(10955515-10955611)
chr5 (425-506)||(13569521-13569602)
chr5 (442-506)||(10843193-10843257)
chr5 (425-506)||(5772571-5772652)
chr5 (442-506)||(35683331-35683395)
chr5 (431-501)||(12656209-12656278)
chr5 (425-506)||(39649730-39649811)
chr5 (405-506)||(10438135-10438235)
[»] scaffold0119 (2 HSPs)
scaffold0119 (438-506)||(37281-37349)
scaffold0119 (438-506)||(30613-30681)
[»] chr2 (21 HSPs)
chr2 (442-506)||(40212162-40212226)
chr2 (427-506)||(28539270-28539349)
chr2 (436-506)||(41099967-41100037)
chr2 (437-506)||(15234725-15234794)
chr2 (425-506)||(39205176-39205257)
chr2 (425-506)||(43572385-43572466)
chr2 (438-506)||(1270556-1270624)
chr2 (442-506)||(37194426-37194490)
chr2 (443-502)||(34757769-34757828)
chr2 (425-503)||(21626287-21626365)
chr2 (425-506)||(1364982-1365063)
chr2 (437-501)||(18590202-18590266)
chr2 (451-506)||(7367737-7367792)
chr2 (425-506)||(13018319-13018400)
chr2 (451-488)||(31082978-31083015)
chr2 (450-506)||(16813781-16813837)
chr2 (450-506)||(16853060-16853116)
chr2 (404-488)||(26905987-26906066)
chr2 (455-506)||(11515203-11515254)
chr2 (455-506)||(43190431-43190482)
chr2 (405-437)||(10820765-10820797)
[»] chr6 (10 HSPs)
chr6 (425-503)||(12779675-12779753)
chr6 (421-506)||(11179965-11180050)
chr6 (425-502)||(28551748-28551823)
chr6 (425-506)||(32719140-32719221)
chr6 (430-499)||(33755205-33755274)
chr6 (443-506)||(20820393-20820457)
chr6 (443-506)||(24849408-24849472)
chr6 (423-506)||(6855810-6855893)
chr6 (443-506)||(33590188-33590251)
chr6 (448-506)||(1567440-1567498)
[»] scaffold0388 (1 HSPs)
scaffold0388 (450-506)||(7230-7286)
[»] scaffold0031 (1 HSPs)
scaffold0031 (442-506)||(93364-93428)
[»] scaffold0024 (1 HSPs)
scaffold0024 (423-502)||(44815-44895)
[»] scaffold0051 (4 HSPs)
scaffold0051 (421-504)||(3405-3488)
scaffold0051 (450-504)||(6626-6680)
scaffold0051 (450-504)||(7609-7663)
scaffold0051 (421-501)||(528-608)
[»] scaffold0128 (1 HSPs)
scaffold0128 (425-506)||(26540-26621)
[»] scaffold0248 (1 HSPs)
scaffold0248 (458-506)||(70-118)
[»] scaffold0991 (1 HSPs)
scaffold0991 (455-495)||(476-516)
[»] scaffold0053 (1 HSPs)
scaffold0053 (438-506)||(29403-29471)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 132 - 541
Target Start/End: Complemental strand, 46443218 - 46442822
Alignment:
Q  132 gtgtggttatctacacttttagttcaatacatatgtatgtcccaaacaatattcgatgttagtttatttgaacttattttatgt-tttaaaactgatttc 230  Q
    |||||| |||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46443218 gtgtggatatctacactt--agttcaatacatatgtatgtaccaaacaatattcgatgttagtttatttgaacttattttatgtctttaaaactgatttc 46443121  T
Q  231 aaaaattatacatacataacttatagaaaatattttgtttcnnnnnnnnnnnnncttaatagaaaatatttagaatttttagagtttaccctcgccccta 330  Q
    |||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||    
T  46443120 aaaaattatacatacataacttatagaaaatattttgtttcaaaaaaaaaaatacttaatagaaaatatttagaatttttagagtttaccctcgccccta 46443021  T
Q  331 ttccattagagtttaccctcgctcctattttaatatggaaagaacatatcaataatctcaataatttcttacgctttgagagtttggaagggaagggaag 430  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||    
T  46443020 ttccattagagtttaccctcgctcctatttcaatatgaaaagaacatatcaataatctcaataatctcttaggctttgggagtttggaagggatgggaag 46442921  T
Q  431 ggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagtttataaattaatacatatgattgcta 530  Q
    |||||||||| ||||||| |||            ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46442920 ggaaaggaaggctttgaggggt------------ggaaaattgagaaatctttcaaaaattttaaaagagtagtttataaattaatacatatgattgcta 46442833  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 46443354 - 46443246
Alignment:
Q  6 aggagcacagatggtgatggttgtcccacactccctctccacctggactaattgttggatagatttcccacaaggaccaccattaaccgaacccaatcca 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46443354 aggagcaccgatggtgatggttgtcccacactccctctccacctggactaattgttggatagatttcccacaaggaccaccattaacccaacccaatcca 46443255  T
Q  106 caatttcag 114  Q
    |||||||||    
T  46443254 caatttcag 46443246  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 38505185 - 38505266
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  38505185 gggaggggaagggaaggctttgaggggtggaaaatttgagggaaaatggagaaatctttcaaattttttaaaagagtagttt 38505266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 33871801 - 33871882
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||| ||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||    
T  33871801 gggaggggaagggaaggctttgaggggtggaaaatatgtgggaaaattgagaaatcttttaaattttttaaaagagtagttt 33871882  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 4058000 - 4058068
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  4058000 aagactttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 4058068  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 2826089 - 2826170
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||| ||||  ||||||  |||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||    
T  2826089 gggaggggaagggaaagctttgaagggtggaaaatatgagaaaaaatggagaaatctttcaaaaaatttaaaagagtagttt 2826170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 30081187 - 30081131
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||    
T  30081187 ggtggaaaatatgaggaaaaattgagaaatctttcaatttttttaaaagagtagttt 30081131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 35264749 - 35264813
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||||   |||||||||||||||    
T  35264749 ctttgaggggtggaaaatatgaaggaaaatagagaaatctttcaaaaaaattaaaagagtagttt 35264813  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 16805408 - 16805489
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| |||| ||||||||||| ||||| ||||||| ||| ||||   |||||||||||||||    
T  16805408 gggaaggaaaagaaagactttgaggggtgcaaaatatgaggaaaaatagagaaattttttaaaaaaattaaaagagtagttt 16805489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 32650232 - 32650313
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||||||||||| |||| ||||||||| | ||||| || ||||||| |||||||||| ||||||||||||    
T  32650232 gggaaggaaaggaaagactttgaggggtgcaaaatatgaagaaaaatagataaatcttacaaaatttttgaaagagtagttt 32650313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 42254208 - 42254127
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||| | ||||| ||||||||||| ||||  ||||||||||||||||    
T  42254208 gggaaggaaaggaaaggctttgaggggtgtaaaatatgaagaaaaatagagaaatcttttaaaaaatttaaaagagtagttt 42254127  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 6746451 - 6746503
Alignment:
Q  454 gaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||| ||||||||||||||||||||||||  |||| ||||| ||||||    
T  6746451 gaaaatatgggggaaaatggagaaatctttcaaatattttgaaagattagttt 6746503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 466
Target Start/End: Original strand, 38470845 - 38470881
Alignment:
Q  430 gggaaaggaagactttgagaggtggaaaatatgaggg 466  Q
    ||||||||||||||||||| |||||||||||||||||    
T  38470845 gggaaaggaagactttgaggggtggaaaatatgaggg 38470881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 506
Target Start/End: Original strand, 43348102 - 43348161
Alignment:
Q  447 agaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| ||||||| ||| ||||| ||| ||||||||||  ||||||||||||||||||    
T  43348102 agaggtgtaaaatataaggaaaaatagagtaatctttcaatttttttaaaagagtagttt 43348161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 13044387 - 13044325
Alignment:
Q  426 ggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    ||||||||| | ||| ||| ||| |||| |||||||||| ||||||||||||||| |||||||    
T  13044387 ggaagggaatgaaaggcttcgaggggtgaaaaatatgagagaaaatggagaaatccttcaaaa 13044325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 506
Target Start/End: Original strand, 15748813 - 15748871
Alignment:
Q  448 gaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| ||||||||| | ||||| |||||||||| |||| |||||||||||| |||||    
T  15748813 gaggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagcagttt 15748871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 23465841 - 23465922
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||| ||||||||||||  ||| | ||||||  ||||||||||  |||||||||| | ||||||||||| ||||||    
T  23465841 gggaggggaagggaagactttgaagggttggaaatataggggaaaatggtaaaatctttcacattttttaaaagaatagttt 23465922  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 506
Target Start/End: Complemental strand, 47359563 - 47359473
Alignment:
Q  416 ggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  47359563 ggaagggaggggaagggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttcaaaaaatttaaaagagtagttt 47359473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 3537446 - 3537365
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||  ||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  3537446 gggaagggaggggaaggctttgaggggtggaaaatatgagggaaaatgaagaaatctttcaaattttttaaaagagtagttt 3537365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 506
Target Start/End: Original strand, 517498 - 517554
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  517498 ggtggaaaatattagggaaaattgagaaatctttcaaaatttttaaaagagtagttt 517554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 50534965 - 50535029
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  50534965 ctttgagtggtggaaaatatgagggaaaatggagaaatctttcaaaaaatttaaatgagtagttt 50535029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 34280722 - 34280664
Alignment:
Q  430 gggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  34280722 gggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttcaaaa 34280664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 503
Target Start/End: Complemental strand, 49183900 - 49183847
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtag 503  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  49183900 ggtggaaaatatgagggaaaatggagaaatctttcaaaaaatttaaaagagtag 49183847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 50948448 - 50948365
Alignment:
Q  424 agggaagggaaaggaa-gactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| ||||||||| ||||||||| |||| ||||||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  50948448 agggaaaggaaaggaaagactttgagtggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagtagttt 50948365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 38639819 - 38639738
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||| ||||||| |||| ||||||| ||| ||||| ||||||||||||||||  ||||||||||||||||    
T  38639819 gggaaggaaaagaaaggctttgaggggtgcaaaatataaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 38639738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 44400939 - 44400858
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  44400939 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 44400858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 33944479 - 33944562
Alignment:
Q  424 agggaagggaaaggaa-gactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| ||||||||| | ||||||| |||| ||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||    
T  33944479 agggaaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatcttttaaaaaatttaaaagagtagttt 33944562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 5939622 - 5939703
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||| ||| || || ||||||||||||||| ||||||||||||||||||    
T  5939622 gggaaggaaaggaaaggctttgaggggtgcaaaatataaggaaatatagagaaatctttcaaattttttaaaagagtagttt 5939703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 37673994 - 37674075
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||| ||||    
T  37673994 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtggttt 37674075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 48908733 - 48908814
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| | ||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  48908733 gggaaggaaaggaaaggctttgaggggtgcagaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 48908814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 25753970 - 25754034
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||||||   |||||||||||||||    
T  25753970 ctttgaggggtgtaaaatatgaggaaaaatagagaaatctttcaaaaaaattaaaagagtagttt 25754034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 503
Target Start/End: Original strand, 33900581 - 33900634
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtag 503  Q
    |||| ||||||||||| ||||| ||||||| ||||||| ||| |||||||||||    
T  33900581 ggtgcaaaatatgaggaaaaatagagaaatttttcaaattttataaaagagtag 33900634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 491
Target Start/End: Complemental strand, 16883943 - 16883884
Alignment:
Q  431 ggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaattt 491  Q
    |||| ||||| |||| || | ||||||||||| |||||| |||||||||||||||||||||    
T  16883943 ggaagggaaggctttaagggatggaaaatatgggggaaa-tggagaaatctttcaaaattt 16883884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 479
Target Start/End: Complemental strand, 35989325 - 35989269
Alignment:
Q  423 aagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaat 479  Q
    |||||| ||||| |||| |||||||| |||| ||||||| || ||||||||||||||    
T  35989325 aagggaggggaatggaatactttgaggggtgaaaaatattagagaaaatggagaaat 35989269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 51686721 - 51686673
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaag 498  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||    
T  51686721 ggtggaaaatacgagggaaaatgaagaaatcttttaaattttttgaaag 51686673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 431 - 506
Target Start/End: Original strand, 5832 - 5906
Alignment:
Q  431 ggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  5832 ggaagggaagactttgaggggtggaaaatatgagggaaaatggagaaatcttttaaaattttt-aaagagtagttt 5906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 436 - 506
Target Start/End: Complemental strand, 34336259 - 34336189
Alignment:
Q  436 ggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  34336259 ggaagactttgaggggtggaaaatatgaggaaaaatggagaaatctttcaaattttgtaaaagagtagttt 34336189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 29584416 - 29584333
Alignment:
Q  424 agggaagggaaaggaa-gactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||| |||||| | ||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||    
T  29584416 agggaaggggaaggaaaggctttgaggggtggaaaatacgagggaaaatgaagaaatctttcaaattttttaaaagtgtagttt 29584333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 36837339 - 36837420
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  36837339 gggaaggaaaggaaagactttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 36837420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 502
Target Start/End: Original strand, 13369775 - 13369835
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagta 502  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  13369775 ctttgaggggtggaaaatatgagagaaaattgagaaatctttcaaattttttaaaagagta 13369835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 79461 - 79540
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaa-aatttttaaaagagtag 503  Q
    |||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  79461 gggaggggaagggaaggctttgaggagtggaaaatatgagggaaaatggagaaatctttcaattttttttaaaagagtag 79540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 13227970 - 13227887
Alignment:
Q  405 tttgagagtttggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    |||||||||||||| |||| |||| |||| || ||||||| ||   |||||||||||||||||||||| |||||||||||||||    
T  13227970 tttgagagtttggaggggaggggaggggagagaaagacttagatgagtggaaaatatgagggaaaatgaagaaatctttcaaaa 13227887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 43239936 - 43239885
Alignment:
Q  455 aaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  43239936 aaaatatgagggaaaatggagaaatctttcaatttttttaaaagagtagttt 43239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 506
Target Start/End: Complemental strand, 8228789 - 8228720
Alignment:
Q  437 gaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||||| ||||||||| |||| |||||||| |||||||| ||  ||||||||||||||||||    
T  8228789 gaagactttgagagatggaaaatacgaggaaaaatggaaaaatcttttaatttttttaaaagagtagttt 8228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 41865477 - 41865557
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| |||||| |||  ||||||| |||| |||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  41865477 gggaggggaaatgaatgctttgag-ggtgaaaaatatgagggaaaatgaagaaatctttcaaaaaatttaaaagagtagttt 41865557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 21173712 - 21173780
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| |||| ||||||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  21173712 aagactttgaggggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagtagttt 21173780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 12506055 - 12506116
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    |||||| |||||||||||| ||  ||||||||||||||||||||||  ||||||||||||||    
T  12506055 tttgaggggtggaaaatataagaaaaaatggagaaatctttcaaaaaatttaaaagagtagt 12506116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 4873122 - 4873167
Alignment:
Q  458 atatgagggaaaatggagaaatctttcaaaatttttaaaagagtag 503  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||    
T  4873122 atatgagggaaaatgaagaaatctttcaaaaaatttaaaagagtag 4873167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 6943318 - 6943387
Alignment:
Q  437 gaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| |||||||  |||||||||||||||||||  ||| |||||||||||||  ||||||| ||||||||    
T  6943318 gaaggctttgaggtgtggaaaatatgagggaaaccggataaatctttcaaaaaatttaaaatagtagttt 6943387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 23932389 - 23932470
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||| | ||||| ||||||||||| ||||  ||||||||||||||||    
T  23932389 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaagaaaaatagagaaatcttttaaaaaatttaaaagagtagttt 23932470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 26772512 - 26772575
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| |||| ||||||| ||| ||||| |||||||||| |||  ||||||||||||||||||    
T  26772512 tttgaggggtgtaaaatataaggaaaaatagagaaatcttacaatttttttaaaagagtagttt 26772575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 36887111 - 36887028
Alignment:
Q  424 agggaagggaaaggaa-gactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||| |||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||    
T  36887111 agggaaggggaaggaaagactttgaggggtggaaaatacgagggaaaatgaagaaatctttcaaattttttaaaagtgtagttt 36887028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 405 - 506
Target Start/End: Complemental strand, 5584765 - 5584664
Alignment:
Q  405 tttgagagtttggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    |||| ||||||||| ||||||| |||| || | ||| ||||||| |||| ||||||||| | ||||| |||||||||| |||| ||||||||||||||||    
T  5584765 tttgcgagtttggaggggaaggaaaggaaaggaaaggctttgaggggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagtagt 5584666  T
Q  505 tt 506  Q
    ||    
T  5584665 tt 5584664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 499
Target Start/End: Original strand, 38795270 - 38795327
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaaga 499  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  38795270 ctttgaaaggtggaaaatatgagggaaaatgaagaaatctttcaaattttttaaaaga 38795327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 52067988 - 52068069
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  52067988 gggaaggaaaagaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 52068069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 69958 - 69890
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| |||||| |||| |||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  69958 aagattttgaggggtgaaaaatatgagggaaaatgaagaaatctttcaatttttttaaaagagtagttt 69890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 666504 - 666436
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| ||||   |||||||||||||||    
T  666504 aagactttgaggggtggaaaatatgagggaaaatgaagaaatcttttaaaaaaattaaaagagtagttt 666436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 431 - 506
Target Start/End: Original strand, 24369110 - 24369185
Alignment:
Q  431 ggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||||||||||| |||| |||||| |||| ||||||||||||||||||||||  |||||||| |||||||    
T  24369110 ggaagggaagactttgaggggtgcaaaatacgaggaaaaatggagaaatctttcaaaaaatttaaaagtgtagttt 24369185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 488
Target Start/End: Original strand, 4204631 - 4204683
Alignment:
Q  436 ggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  4204631 ggaaggctttgagaggtggaaattacgagggaaaatggagaaatctttcaaaa 4204683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 14439812 - 14439748
Alignment:
Q  424 agggaagggaaa-ggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaa 487  Q
    |||| ||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  14439812 aggggagggaaacggaagactttgaggggtgaaaaatatgaggaaaaatggagaaatctttcaaa 14439748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 506
Target Start/End: Complemental strand, 33324853 - 33324783
Alignment:
Q  436 ggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||||| ||||| |||||||||||||||||||||| | ||| |||  ||||||||||| |||||    
T  33324853 ggaagactttgaggggtgggaaatatgagggaaaatggagaatttttttaaatgttttaaaagaggagttt 33324783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 34154179 - 34154260
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | |||| |||||| |||| ||||||||||  ||||| ||||||||||||||||  ||||||||||||||||    
T  34154179 gggaaggaaaggaaagattttgaggggtgcaaaatatgagaaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 34154260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 37649457 - 37649538
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||   |||||||||||||||    
T  37649457 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaaattaaaagagtagttt 37649538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 37875611 - 37875665
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaa 497  Q
    |||||| |||| |||||||||| ||||||||| |||||||||||||||| |||||    
T  37875611 tttgaggggtgaaaaatatgagagaaaatggaaaaatctttcaaaatttctaaaa 37875665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 2909357 - 2909276
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||  ||||| |||| |||||||||||  ||||||||||||||||    
T  2909357 gggaaggaaaggaaaggctttgaggggtgcaaaatatgagaaaaaatagagagatctttcaaaaaatttaaaagagtagttt 2909276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 17760326 - 17760407
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| || |||||||| ||||| ||||||| ||||||||  ||||||||||||||||    
T  17760326 gggaaggaaatgaaaggctttgaggggtgcaacatatgaggaaaaatagagaaatttttcaaaaaatttaaaagagtagttt 17760407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 27255409 - 27255358
Alignment:
Q  455 aaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||| || ||||| ||||||||||||||  ||||||||||||||||||    
T  27255409 aaaatatgtggaaaaatagagaaatctttcaagttttttaaaagagtagttt 27255358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 41817158 - 41817221
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| |||| ||||||| ||| ||||| |||| |||||||||||  ||||||||||||||||    
T  41817158 tttgaggggtgtaaaatataaggaaaaatagagagatctttcaaaaaatttaaaagagtagttt 41817221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 506
Target Start/End: Complemental strand, 46001788 - 46001725
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| |||| ||||||||| | ||||| ||||||||||| ||||  ||||||||||||||||    
T  46001788 tttgaggggtgcaaaatatgaagaaaaatagagaaatcttttaaaaaatttaaaagagtagttt 46001725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 32511480 - 32511544
Alignment:
Q  443 tttgagaggtggaaaatat--gagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||||||||||   ||||||||| |||||||||||  |||||||||||||| ||||||    
T  32511480 tttgagaggtggaaaatataaaagggaaaatagagaaatcttt-taaatttttaaaagaatagttt 32511544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 508
Target Start/End: Complemental strand, 34749797 - 34749731
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagtttat 508  Q
    |||||| | ||| |||||||  ||||||||||||||||||||||||| |||| ||| |||| |||||    
T  34749797 ctttgacacgtgaaaaatataggggaaaatggagaaatctttcaaaaattttgaaaaagtattttat 34749731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 6570719 - 6570651
Alignment:
Q  416 ggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttca 485  Q
    ||||||||||||||||||| || |||| ||| | |||||||||||  ||||||||| ||||||| |||||    
T  6570719 ggaagggaagggaagggaaggggagaccttggg-ggtggaaaataaaagggaaaatagagaaatttttca 6570651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 29092305 - 29092260
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    |||||| |||| ||||||||||| ||||| ||||||||||||||||    
T  29092305 tttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaa 29092260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 433
Target Start/End: Original strand, 8156167 - 8156195
Alignment:
Q  405 tttgagagtttggaagggaagggaaggga 433  Q
    |||||||||||||||||||||||||||||    
T  8156167 tttgagagtttggaagggaagggaaggga 8156195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 38136675 - 38136756
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||| | ||| ||||||| |||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  38136675 gggaagggaaggaaaggctttgaggggtgcaaaatatgagggaaaatagagaaatctttcaaaaaatttaaaagagtagttt 38136756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 12708673 - 12708755
Alignment:
Q  424 agggaagggaaaggaa-gactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagtt 505  Q
    |||||| ||||||||| | ||||||| |||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  12708673 agggaaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagtt 12708755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 506
Target Start/End: Original strand, 49667957 - 49668036
Alignment:
Q  426 ggaagggaaagg-aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||| |||| |||||| | |||||||||||||||||||||||||||| | ||||||  ||||||||||||||||    
T  49667957 ggaagggaaagggaagattttgagggatggaaaatatgagggaaaatggagaaatgtgtcaaaa--tttaaaagagtagttt 49668036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 30198629 - 30198693
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  30198629 ctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 30198693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 431 - 506
Target Start/End: Original strand, 22165613 - 22165690
Alignment:
Q  431 ggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatct--ttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||| |  || ||| |||||||| |||||||||    
T  22165613 ggaagggaaggctttgagaggtggaaaatatgagggaaaattgagaaatatgatttaaattttttaaacgagtagttt 22165690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 29114084 - 29114165
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||| ||||||    
T  29114084 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagaatagttt 29114165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 368273 - 368217
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||| ||  ||||| |||||||||||||||| |||||||||||||||||    
T  368273 ggtggaaaatattagaaaaaattgagaaatctttcaaaaattttaaaagagtagttt 368217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 506
Target Start/End: Complemental strand, 16423135 - 16423072
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| || ||||||||||||||||||| ||||||||||||||||   |||||||| ||||||    
T  16423135 tttgagcggcggaaaatatgagggaaaatagagaaatctttcaaaaaaattaaaagaatagttt 16423072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 16461586 - 16461632
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  16461586 ctttgaggggtggaaaatatgagggaaaattgagaaatcttttaaaa 16461632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 506
Target Start/End: Complemental strand, 55510090 - 55510038
Alignment:
Q  453 ggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||| |||||||||| ||||||||||||||||  ||||||||||||||||    
T  55510090 ggaaaatacgagggaaaatagagaaatctttcaaaa-atttaaaagagtagttt 55510038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 41708964 - 41709040
Alignment:
Q  430 gggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||| |||||||||||||   || ||||||||||| | ||||||||||||||||||||   || ||||||||||||    
T  41708964 gggaagggaagactttgaggattgaaaaatatgaggtagaatggagaaatctttcaaaaaaattcaaagagtagttt 41709040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 28880229 - 28880154
Alignment:
Q  427 gaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagta 502  Q
    |||||||||||||||||||||| || |  ||||||  |||||||| ||||||||||| | | ||||| ||||||||    
T  28880229 gaagggaaaggaagactttgaggggagagaaatataggggaaaattgagaaatcttttacattttttgaaagagta 28880154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 501
Target Start/End: Original strand, 50784216 - 50784275
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagt 501  Q
    ||||||| |||| |||||||||| |||| || |||||||||||||  |||||||||||||    
T  50784216 ctttgaggggtgaaaaatatgagagaaattgaagaaatctttcaatttttttaaaagagt 50784275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 20896279 - 20896331
Alignment:
Q  454 gaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||||||||||   |||||||||||  ||||||||||||||||||    
T  20896279 gaaaatacgagggaaaatgagaaaatctttcaatttttttaaaagagtagttt 20896331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 50494496 - 50494568
Alignment:
Q  426 ggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaag 498  Q
    ||||||||| | ||||||||||  | |  ||||||||||||||||| ||||| ||||||||||  ||||||||    
T  50494496 ggaagggaaggaaagactttgaaggataaaaaatatgagggaaaatagagaattctttcaaaaaatttaaaag 50494568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 55058626 - 55058582
Alignment:
Q  455 aaaatatgagggaaaatggagaaatctttcaaaatttttaaaaga 499  Q
    ||||||||| ||||||||||||||| ||||| ||||||| |||||    
T  55058626 aaaatatgaaggaaaatggagaaatatttcacaatttttgaaaga 55058582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 14569908 - 14569972
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  14569908 ctttgaggggtggaaaatatgagggaaaatggagaaatctttcaaaaaatttaaaagagttgttt 14569972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 38568231 - 38568301
Alignment:
Q  436 ggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||| ||| ||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  38568231 ggaaggcttcgaggggtggaaaatatgagggaaaatgaagaaatctttcaatttttttaaaagagtagttt 38568301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 405 - 506
Target Start/End: Original strand, 10955515 - 10955611
Alignment:
Q  405 tttgagagtttggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    ||||||||||||||  ||||| ||||| ||||     |||||||  ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  10955515 tttgagagtttggagaggaagagaaggaaaag-----ctttgaggagtgaaaaatatgaggaaaaatggagaaatctttcaaaaattttaaaagagtagt 10955609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 13569602 - 13569521
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||||||||||  |||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||    
T  13569602 gggaaggaaaggaaagactttgatgggtgcaaaatatgaggaaaaatagagaaatcttttaaattttttaaaagagtagttt 13569521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 10843257 - 10843193
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  10843257 ctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 10843193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 5772571 - 5772652
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||||||||||| |||| ||||||||| | ||||| |||||| ||| |||| ||||||||||||||||||    
T  5772571 gggaaggaaaggaaagactttgaggggtgcaaaatatgaagaaaaatagagaaaccttacaaattttttaaaagagtagttt 5772652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 35683331 - 35683395
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  35683331 ctttgaggggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagtagttt 35683395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 12656209 - 12656278
Alignment:
Q  431 ggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagt 501  Q
    ||||| || ||||||||| |||| |||||||| | |||||||||||||||||||| | |||||||||||||    
T  12656209 ggaaatgaggactttgag-ggtgaaaaatatgtgagaaaatggagaaatctttcacattttttaaaagagt 12656278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 39649811 - 39649730
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||| ||| ||||||||    
T  39649811 gggaaggaaaggtaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaattttaaaaagtagttt 39649730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 506
Target Start/End: Complemental strand, 10438235 - 10438135
Alignment:
Q  405 tttgagagtttggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    |||| ||||||||| || ||||||| | || | ||| ||||||| |||| ||||||||||| ||||| ||||||| ||| ||| ||||||| | ||||||    
T  10438235 tttgggagtttggagggaaagggaatg-aatgaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaattttttaaattttttaacatagtagt 10438137  T
Q  505 tt 506  Q
    ||    
T  10438136 tt 10438135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 37349 - 37281
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| ||| |||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||    
T  37349 aagactttgaggggtagaaaatatgagggagaattgagaaatcttttaaattttttaaaagagtagttt 37281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 30681 - 30613
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| | | |||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||    
T  30681 aagactttgagggttagaaaatatgagggagaattgagaaatcttttaaattttttaaaagagtagttt 30613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 40212226 - 40212162
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  40212226 ctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaattttaaaagagtagttt 40212162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 28539270 - 28539349
Alignment:
Q  427 gaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||  |||||||||| || |||||||||||||| |||||||| |||||||||||||||  ||||||| ||||||||    
T  28539270 gaagggaggggaagactttaaggggtggaaaatatgaaggaaaatgaagaaatctttcaaaaaatttaaaatagtagttt 28539349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 41099967 - 41100037
Alignment:
Q  436 ggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||||||| |||| |||||||||||| ||||    
T  41099967 ggaaggctttgaggggtgaaaaatatgagggaaaatgaagaaatcttttaaaaattttaaaagagtggttt 41100037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 15234725 - 15234794
Alignment:
Q  437 gaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||| ||  ||||||||| ||||||||    
T  15234725 gaagactttgaggggtggaaaatacgagggaaaatggagaaatttttaaatttttttaaaatagtagttt 15234794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 39205257 - 39205176
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| ||||| ||||| |||| || |||||||  |||||||||||||| |||||||||||||||  ||||||||||||||||    
T  39205257 gggaggggaagggaaggcttttaggggtggaatgtatgagggaaaatgtagaaatctttcaaaaaatttaaaagagtagttt 39205176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 43572385 - 43572466
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  43572385 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 43572466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 1270556 - 1270624
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| | | |||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||    
T  1270556 aagactttgagggatagaaaatatgagggagaattgagaaatcttttaaattttttaaaagagtagttt 1270624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 37194490 - 37194426
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  37194490 ctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 37194426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 34757828 - 34757769
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagta 502  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||| ||| |||||||||    
T  34757828 tttgaggggtggaaaatatgagagaaaattgagaaatctttcaaaaatttgaaaagagta 34757769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 21626365 - 21626287
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtag 503  Q
    ||||||| || | ||| ||||||| |||| ||||||||||| ||||||||||||| ||||||| ||| |||||||||||    
T  21626365 gggaaggaaatgaaaggctttgaggggtgcaaaatatgaggaaaaatggagaaatttttcaaattttctaaaagagtag 21626287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 1365063 - 1364982
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  1365063 gggaaggaaaggaaaggctttgaggggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagtagttt 1364982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 501
Target Start/End: Complemental strand, 18590266 - 18590202
Alignment:
Q  437 gaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagt 501  Q
    |||||||||||| | | ||||||||||||||||| | |||||||||||||||  |||||||||||    
T  18590266 gaagactttgagggatagaaaatatgagggaaaacgaagaaatctttcaaaaaatttaaaagagt 18590202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 506
Target Start/End: Complemental strand, 7367792 - 7367737
Alignment:
Q  451 gtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||||||||||||||||| |||||||||||| | ||||| ||||| ||||||    
T  7367792 gtggaaaatatgagggaaaatgaagaaatctttcacatttttttaaagaatagttt 7367737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 13018319 - 13018400
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| |||||||| |  ||||| ||||||||||||||  ||||||||||||||||||    
T  13018319 gggaaggaaaggaaaggctttgaggggtgcaaaatatgtgaaaaaatagagaaatctttcaatttttttaaaagagtagttt 13018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 31083015 - 31082978
Alignment:
Q  451 gtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  31083015 gtggaaaatatgagggaaaatggagaaatctatcaaaa 31082978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 16813837 - 16813781
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||||||||||||||  |||||||||| ||||  ||||||||||| ||||    
T  16813837 ggtggaaaatatgagggaaaataaagaaatcttttaaaaaatttaaaagagtggttt 16813781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 16853116 - 16853060
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||||||||||||||  |||||||||| ||||  ||||||||||| ||||    
T  16853116 ggtggaaaatatgagggaaaataaagaaatcttttaaaaaatttaaaagagtggttt 16853060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 26906066 - 26905987
Alignment:
Q  404 ctttgagagtttggaagggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaa 488  Q
    ||||| ||||||||| ||||||| |||| ||||     ||||||| |||| ||||||||||| ||||| ||||||||||||||||    
T  26906066 ctttgggagtttggatgggaaggaaaggaaaag-----ctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaa 26905987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 11515254 - 11515203
Alignment:
Q  455 aaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  11515254 aaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagtagttt 11515203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 506
Target Start/End: Original strand, 43190431 - 43190482
Alignment:
Q  455 aaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||    
T  43190431 aaaatatgaggaaaaatagagaaatcttttaaaaaatttaaaagagtagttt 43190482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 10820797 - 10820765
Alignment:
Q  405 tttgagagtttggaagggaagggaagggaaagg 437  Q
    ||||||||||||||||||||||| |||||||||    
T  10820797 tttgagagtttggaagggaaggggagggaaagg 10820765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 12779753 - 12779675
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtag 503  Q
    ||||||| || | ||||||||||| |||| ||||||||||| ||||||||||||| ||||||| ||| |||||||||||    
T  12779753 gggaaggaaatgaaagactttgaggggtgcaaaatatgaggaaaaatggagaaatttttcaaattttctaaaagagtag 12779675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 11179965 - 11180050
Alignment:
Q  421 ggaagggaagggaaaggaa-gactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||||| ||||||||| | ||||||| |||| |||||||||||  |||| |||||||  |||||||||||||||||||||||||    
T  11179965 ggaagggaa-ggaaaggaagggctttgaggggtgcaaaatatgaggataaatagagaaattcttcaaaatttttaaaagagtagttt 11180050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 502
Target Start/End: Original strand, 28551748 - 28551823
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagta 502  Q
    |||| ||||| |||| ||||||| ||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||    
T  28551748 gggaggggaagggaaaactttgaaaggtggaaaatatgaggg--aatagagaaatctttcaaaaaatttaaaagagta 28551823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 32719140 - 32719221
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||  ||||| ||||||||||||||||  ||||||||||||||||    
T  32719140 gggaaggaaaggaaaggctttgaggggtgcaaaatatgagtaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 32719221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 499
Target Start/End: Complemental strand, 33755274 - 33755205
Alignment:
Q  430 gggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaaga 499  Q
    |||||| |||||||||||  ||||||||||| ||||||||||| | |||||||||||||  |||||||||    
T  33755274 gggaaatgaagactttgaatggtggaaaatacgagggaaaatgaaaaaatctttcaaaaaatttaaaaga 33755205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 20820393 - 20820457
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaa-aatttttaaaagagtagttt 506  Q
    |||||| ||||||||||||||||||||||||||||   ||||||   ||||||||||||||||||    
T  20820393 tttgaggggtggaaaatatgagggaaaatggagaatcatttcaattttttttaaaagagtagttt 20820457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 24849408 - 24849472
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaa-aatttttaaaagagtagttt 506  Q
    |||||| ||||||||||||||||||||||  |||||||||||||   ||||||||||||| ||||    
T  24849408 tttgaggggtggaaaatatgagggaaaattaagaaatctttcaattttttttaaaagagtggttt 24849472  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 506
Target Start/End: Complemental strand, 6855893 - 6855810
Alignment:
Q  423 aagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| || |||| ||| ||||||| ||||||||||||||||||||||| | |||| ||| ||||  ||| ||||| ||||||    
T  6855893 aagggagggaaaagaaaggctttgaggggtggaaaatatgagggaaaatgaaaaaatattttaaaaaatttgaaagaatagttt 6855810  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 33590188 - 33590251
Alignment:
Q  443 tttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| |||| ||||||||||  ||| ||||||||| ||||||  ||||||||||||||||||    
T  33590188 tttgaggggtgcaaaatatgagaaaaattggagaaatttttcaatttttttaaaagagtagttt 33590251  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 1567498 - 1567440
Alignment:
Q  448 gaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||| ||||||||| | ||||| |||||||||| |||| |||||||||||| |||||    
T  1567498 gaggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaagagcagttt 1567440  T

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Target: scaffold0388 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 7286 - 7230
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||| ||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  7286 ggtggaaagtatgagggaaaatggagaaatttttcaatttttttaaaagagtagttt 7230  T

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Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 93364 - 93428
Alignment:
Q  442 ctttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  93364 ctttgaggggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 93428  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 44815 - 44895
Alignment:
Q  423 aagggaagg-gaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagta 502  Q
    ||||||||| ||| |||||| |||||  |||||||||||| |||||||||| | |||||||| ||| ||||||||||||||    
T  44815 aagggaaggagaagggaagattttgacgggtggaaaatattagggaaaatgaaaaaatcttttaaattttttaaaagagta 44895  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 504
Target Start/End: Original strand, 3405 - 3488
Alignment:
Q  421 ggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    ||||||||||  || | ||| ||||||  |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  3405 ggaagggaagaaaatgaaaggctttgatgggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagt 3488  T

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Target: scaffold0051; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 6626 - 6680
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  6626 ggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagt 6680  T

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Target: scaffold0051; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 7609 - 7663
Alignment:
Q  450 ggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagt 504  Q
    |||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  7609 ggtgcaaaatatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagt 7663  T

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Target: scaffold0051; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 528 - 608
Alignment:
Q  421 ggaagggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagt 501  Q
    ||||||||||  || | ||| ||||||| |||  ||||||||||| ||||| | ||||||||||||||  |||||||||||    
T  528 ggaagggaagaaaaggaaaggctttgaggggttaaaaatatgaggaaaaatagggaaatctttcaaaaaatttaaaagagt 608  T

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Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 26621 - 26540
Alignment:
Q  425 gggaagggaaaggaagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    ||||||| || | ||| ||||||| |||| ||||||||||  ||||| |||||||||| |||||  ||||||||||||||||    
T  26621 gggaaggaaaggaaaggctttgaggggtgcaaaatatgagaaaaaatagagaaatcttccaaaaaatttaaaagagtagttt 26540  T

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Target: scaffold0248 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 70 - 118
Alignment:
Q  458 atatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  70 atatgaggaaaaatagagaaatctttcaaaaaatttaaaagagtagttt 118  T

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Target: scaffold0991 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 495
Target Start/End: Complemental strand, 516 - 476
Alignment:
Q  455 aaaatatgagggaaaatggagaaatctttcaaaatttttaa 495  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  516 aaaatatgagggaaaatgaagaaatcgttcaaaatatttaa 476  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 29471 - 29403
Alignment:
Q  438 aagactttgagaggtggaaaatatgagggaaaatggagaaatctttcaaaatttttaaaagagtagttt 506  Q
    |||| |||||| || | ||||||||| | ||||| || ||||||| |||| ||||||||||||||||||    
T  29471 aagattttgaggggagcaaaatatgaagaaaaatagataaatcttacaaattttttaaaagagtagttt 29403  T

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