View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3858_low_9 (Length: 471)
Name: NF3858_low_9
Description: NF3858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3858_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 47705063 - 47705505
Alignment:
| Q |
18 |
actttcaacaccctcctatgcaatttcaagtatctggcatgtggaacacttttcaatattgtcttgatttcacttatcctctttgatggaatatgcaatg |
117 |
Q |
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| T |
47705063 |
actttcaacaccctcctatgcaatttcaagtatctggcatgtggaacactttttaatattgtcttgatttcacttatcctctttgatggaatatgcaatg |
47705162 |
T |
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| Q |
118 |
aaaatttgctccaatcaagaacatcactaaagggtaattgatagttatccgaaacaatcacagggacacatccagtgtttatagactccacaagtctagg |
217 |
Q |
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| T |
47705163 |
aaaatttgctccaatcaagaacatcactaaagggtaattgatagttatccgaaacaatcacagggacacatccagtgtttatagactccacaagtctagg |
47705262 |
T |
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| Q |
218 |
gctagctacttcatagccacttggacacaagcaaaacttgctttttcccatgagtttaaagtacttaagnnnnnnnggaagatattcatacactagtact |
317 |
Q |
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| T |
47705263 |
gctagctacttcatagccacttggacacaagcaaaacttgctttttcccatgagtttaaagtacttaagtttttttggaagatattcatacactagtact |
47705362 |
T |
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| Q |
318 |
tctttatcttttcctttccattgatctagtaatgtctttctaatcataccatgttcccctccagcaaagaaagcaagtatagaacgattatttgggtctt |
417 |
Q |
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| T |
47705363 |
tctttatcttttcctttccattgatctagtaatgtctttctaatcataccatgttcccctccagcaaagaaagcaagtatagaacgattatttgattctt |
47705462 |
T |
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| Q |
418 |
tgcttggaattggtgagctcaacttgtaaccttgtaggttcat |
460 |
Q |
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| T |
47705463 |
tgcttggaattggtgagctcaacttgtaaccttgtaggttcat |
47705505 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 44629206 - 44629169
Alignment:
| Q |
222 |
gctacttcatagccacttggacacaagcaaaacttgct |
259 |
Q |
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| T |
44629206 |
gctacttcataaccacttggacacaaacaaaacttgct |
44629169 |
T |
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