View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3859_low_1 (Length: 391)
Name: NF3859_low_1
Description: NF3859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3859_low_1 |
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| [»] scaffold0111 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 13581089 - 13581458
Alignment:
| Q |
11 |
atcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13581089 |
atcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccgggga-cctccaactccttccgtgattatggactaactcgttccacatca |
13581187 |
T |
|
| Q |
111 |
tccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacacaag |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13581188 |
tccgaaagcacgccagcgtgcacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacgcaag |
13581287 |
T |
|
| Q |
211 |
gatgtgtttgtgtttgtgttggagccgcagtgatggcaacatcataagcaacaattatttgttgtggctccgtaagtgctgaaaatgcattggatgaacc |
310 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13581288 |
gatgtgtctgtgtttgtgttggagccgcagtggtggcaacatcataagcaacaattatttgttgtggctctataagtgctgaaaatgcattggatgaacc |
13581387 |
T |
|
| Q |
311 |
tataccgggaggattctcttttgtaggcacccactgaattttcttgactggaatctgcgccttcccctttg |
381 |
Q |
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| T |
13581388 |
tataccgggaggattctcttttgtaggcacccactgaattttcttgactggaatttgcgccttcccctttg |
13581458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 9284455 - 9284263
Alignment:
| Q |
10 |
catcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatc |
109 |
Q |
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||||||||||||||| ||||||||||||| ||||| ||||| | || |||| ||| ||| |||||||| ||| |||| | | | |||||||||||||| |
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| T |
9284455 |
catcatcatgggcatttgaggatggatgtatcacaggtgcatcgtggatccggggtaccaccaactccccccgcgattctaaatttacttgttccacatc |
9284356 |
T |
|
| Q |
110 |
atccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacac |
205 |
Q |
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||||||||||||| || || |||||||| || |||||| ||||||||| || || ||||||| ||||| |||||||| |||||||||||||| |
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| T |
9284355 |
atccgaaagcacgtcaatgtgcacatcat---caggggaagctaactccaaaactaggtgcgaaggcaaagagccttgagggatctcatcagacac |
9284263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 38500923 - 38500984
Alignment:
| Q |
282 |
gtaagtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcaccca |
343 |
Q |
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|||||||||| |||||| ||||||||||||||||| | ||||| ||||| |||| |||||| |
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| T |
38500923 |
gtaagtgctgcaaatgctttggatgaacctataccagatggattttctttcgtagacaccca |
38500984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 20951570 - 20951455
Alignment:
| Q |
27 |
gaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccag |
126 |
Q |
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|||||||||| |||| || ||||| |||||||| | ||| ||||||||||| ||||| || || | |||| |||||||||||||||||||||||| || |
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| T |
20951570 |
gaggatggatatgtctcatgtgcattctgaatccggagaatctccaactcctcccgtggttctgaattaacatgttccacatcatccgaaagcacgtcat |
20951471 |
T |
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| Q |
127 |
cgtacacatcatcaac |
142 |
Q |
| |
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||| |||||||||||| |
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| T |
20951470 |
cgttcacatcatcaac |
20951455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 10288102 - 10288211
Alignment:
| Q |
96 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
195 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| || ||||| || |||||| ||||||||| | ||||| ||||| ||||| ||||| || |||| |
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| T |
10288102 |
acttgttccacatcatccgaaagcatgacagcgtgcaaatcat---caggggaagctaactccaatattgggcgtgaaggcaaagagccttgggggatct |
10288198 |
T |
|
| Q |
196 |
catcagacacaca |
208 |
Q |
| |
|
| ||||||||||| |
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|
| T |
10288199 |
cctcagacacaca |
10288211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 10303819 - 10303927
Alignment:
| Q |
96 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
195 |
Q |
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||||||||||||| |||| |||||||| |||||| |||||||||| |||||| ||||||||| || ||| || |||| ||||| ||||| || |||| |
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| T |
10303819 |
acttgttccacat-atccaaaagcacgacagcgtgcacatcatcag---gggaagctaactccaatactgggtgcaaaggcaaagagccttgggggatct |
10303914 |
T |
|
| Q |
196 |
catcagacacaca |
208 |
Q |
| |
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| ||||||||||| |
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| T |
10303915 |
cctcagacacaca |
10303927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 21492631 - 21492761
Alignment:
| Q |
68 |
ctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacgggg |
167 |
Q |
| |
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||||||||||| |||||||| || | |||||||||||||||||||||||||||| || ||| |||||||| ||||||||| |||||||||||| ||| |
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| T |
21492631 |
ctccaactcctcccgtgattctgaataaacttgttccacatcatccgaaagcacgtcatcgtgcacatcat---caagggaagctaactccaacacaggg |
21492727 |
T |
|
| Q |
168 |
cgcgaaggtaaagaaccttgaggaatctcatcag |
201 |
Q |
| |
|
| ||| || || | ||||| || |||||||||| |
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| T |
21492728 |
ctcgacggcaatgttccttgggggatctcatcag |
21492761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 33065794 - 33065900
Alignment:
| Q |
96 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
195 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||| |||||| ||||||| |||| ||||||||||| ||||| ||||| || |||| |
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|
| T |
33065794 |
acttgttccacggcatccgaaagcacgtcagcgtgcacatcatcag---gggaagctaactccgacactgggcgcgaaggcaaagatccttgggggatct |
33065890 |
T |
|
| Q |
196 |
catcagacac |
205 |
Q |
| |
|
| |||||||| |
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|
| T |
33065891 |
cctcagacac |
33065900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 29042380 - 29042254
Alignment:
| Q |
16 |
catgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccga |
115 |
Q |
| |
|
|||||||||| |||||||||| |||| || ||||| |||||| | ||||| ||||||||||| ||||| || | | |||| ||||||||||||||||| |
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|
| T |
29042380 |
catgggcatccgaggatggatttgtctcatgtgcattctgaattcggggaatctccaactcctcccgtggttccgaattaacatgttccacatcatccga |
29042281 |
T |
|
| Q |
116 |
aagcacgccagcgtacacatcatcaac |
142 |
Q |
| |
|
||||||| || || |||||||||||| |
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|
| T |
29042280 |
aagcacgtcattgtgcacatcatcaac |
29042254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 13330274 - 13330387
Alignment:
| Q |
9 |
acatcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattat-ggactaacttgttccaca |
107 |
Q |
| |
|
||||||||||| || || |||||| || |||||||||||| ||||||||| ||||| ||||||||||| || ||||| ||||| || |||||| || |
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| T |
13330274 |
acatcatcatgcacaactaaggatgtattcgtcacaagtgcatcctgaatccggggaatctccaactcctcccaa-attatcggacttacatgttcctca |
13330372 |
T |
|
| Q |
108 |
tcatccgaaagcacg |
122 |
Q |
| |
|
|||||||||||||| |
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|
| T |
13330373 |
acatccgaaagcacg |
13330387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 46049 - 46232
Alignment:
| Q |
56 |
aatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaac |
155 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| || | ||||||||||||||||||| |||||||| || ||| || |||| ||||||||| |||| |
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|
| T |
46049 |
aatccagggtatctccaactcctcccgtgattctgaataaacttgttccacatcatccaaaagcacgtcatcgtgca---catcggcaagggaagctaac |
46145 |
T |
|
| Q |
156 |
tccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacacaaggatgtgtttgtgtttgtgttggagccgcagtg |
242 |
Q |
| |
|
|||||||| |||| ||| | || | |||| || ||||||||||||||||| || ||||||| | ||||||||||||||||| |
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|
| T |
46146 |
tccaacacagggctcgacgtcaatgtttcttgggggatctcatcagacacacaggggggtgtttgagcaagtgttggagccgcagtg |
46232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 4459 - 4516
Alignment:
| Q |
286 |
gtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcaccca |
343 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| | ||||| |||||||||| |||||| |
|
|
| T |
4459 |
gtgctgcaaatgctttggatgaacctataccagatggattttcttttgtagacaccca |
4516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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