View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3859_low_2 (Length: 374)
Name: NF3859_low_2
Description: NF3859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3859_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 8439588 - 8439407
Alignment:
| Q |
50 |
gggatgatttgaagacgttttttctcgggataaatagcatccctctttggtaaatttgttgttttaaaatatgtccccgagtaaatatgcattttcattt |
149 |
Q |
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| T |
8439588 |
gggatgatttcaagacgttttttctcgggataaatagcatccctctttggtaaatttgttgttttaaaatatgtccccgagtaaatatgcattttcattt |
8439489 |
T |
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| Q |
150 |
attcaccacagatgcttttaaattgtggtttgatttaactcttttccatttcgttgaaaatataattcaatttcataattgt |
231 |
Q |
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| T |
8439488 |
attcaccacagatgcttttaaattgtggtttgatttaactcttttccatttcgttgaagatataattcaatttcataattgt |
8439407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 228 - 374
Target Start/End: Complemental strand, 8439292 - 8439152
Alignment:
| Q |
228 |
ttgtttgaaatcctttagtagtattcttattcttctttaactcttattccatcctgcatcgtatatcatacttcatcggtttgcaatcaaacaccatgtc |
327 |
Q |
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| T |
8439292 |
ttgtttgaaatcctttagtagtattcttattcttctttaactcttattccatcctgcatcgtatatcatacttcatcggtttgcaatcaaacaccat--- |
8439196 |
T |
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| Q |
328 |
aatgtcatgagctcatgaagcaaccaaaggtccgggtcttctatgag |
374 |
Q |
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| T |
8439195 |
---gtcatgagctcatgaagcaaccaaaggtccgggtcttctatgag |
8439152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 8439658 - 8439629
Alignment:
| Q |
20 |
ggcccacctttatatatcacacaacctatg |
49 |
Q |
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| T |
8439658 |
ggcccacctttatatatcacacaacctatg |
8439629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 52590692 - 52590749
Alignment:
| Q |
143 |
ttcatttattcaccacagatgcttttaaattgtggtttgatttaactcttttccattt |
200 |
Q |
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| T |
52590692 |
ttcatttattcaccattgatgtttttaaaccgtgctttggtttaactcttttccattt |
52590749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 94
Target Start/End: Complemental strand, 16358898 - 16358867
Alignment:
| Q |
63 |
gacgttttttctcgggataaatagcatccctc |
94 |
Q |
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| T |
16358898 |
gacgttttttctcgggataaatagcatccctc |
16358867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 32816548 - 32816507
Alignment:
| Q |
50 |
gggatgatttgaagacgttttttctcgggataaatagcatcc |
91 |
Q |
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| T |
32816548 |
gggatgatttcgagacgtttttcctcgggataaatagcatcc |
32816507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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