View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3859_low_4 (Length: 331)
Name: NF3859_low_4
Description: NF3859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3859_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 28622344 - 28622645
Alignment:
| Q |
16 |
gcaacaagaagaaacccagctggaattaaacgaaaagacgcaacgaaaaaaggaccgtaattaggaatcacttctttcatcgccaccattgcagttcccc |
115 |
Q |
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| T |
28622344 |
gcaacaagaagaaacccagctggaattaaacgaaaagacgcaacgaaaaaaggaccgtaattaggaatcacttctttcatcgccaccattgcagttcccc |
28622443 |
T |
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| Q |
116 |
agaaaaagaacggtgatattaacactgcaccttcccataacgcttccccaaggcacagtctcttcgatgatgattcatcttttgtttttccttcgtcttc |
215 |
Q |
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| T |
28622444 |
agaaaaagaacggtgatattaacactgcaccttcccataacgcttccccaaggcacagtctcttcgatgatgattcatcttttgtttttccttcgtcttc |
28622543 |
T |
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| Q |
216 |
ttcggttaggagacactccacatcttgtcctgttccaacgcaatctaccaactcgagatcggtggattctgttgatttgccggtggttttgttggagcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28622544 |
ttcggttaggagacactccacatcttgtcctgttccgacgcaatctaccaactcgagatcggtggattctgttgatttgccggtggttttgttggagcat |
28622643 |
T |
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| Q |
316 |
gg |
317 |
Q |
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|| |
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| T |
28622644 |
gg |
28622645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 28618047 - 28618187
Alignment:
| Q |
16 |
gcaacaagaagaaacccagctggaattaaacgaaaagacgcaacgaaaaaaggaccgtaattaggaatcacttctttcatcgccaccattgcagttcccc |
115 |
Q |
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||||||||||| ||||| || ||||| | ||||||||| | ||| ||||||||||||| || ||||||||||||||||| |||||||| | ||| |||| |
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| T |
28618047 |
gcaacaagaaggaacccggcaggaatgagacgaaaagaagaaacaaaaaaaggaccgtgtttcggaatcacttctttcattgccaccatggaagtgcccc |
28618146 |
T |
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| Q |
116 |
agaaaaagaacggtgatattaacactgcaccttcccataac |
156 |
Q |
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|||| |||||||| ||||||||||| ||||||| ||||||| |
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| T |
28618147 |
agaagaagaacggcgatattaacacagcaccttgccataac |
28618187 |
T |
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