View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3859_low_5 (Length: 229)
Name: NF3859_low_5
Description: NF3859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3859_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 37012517 - 37012739
Alignment:
| Q |
7 |
ggtaaaccatgactcacatagaaatgcaacaaagcaaggaaaattgtggttattgtaggaagaaacacgataggcaagaagtaagaagaggaggagcaat |
106 |
Q |
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| T |
37012517 |
ggtaaaccatgactcacatagaaatgcaacaaagcaagaaaaattgtggttattgtaggaagaaacacgataagcaagaagtaagaagaggaggagcaat |
37012616 |
T |
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| Q |
107 |
gtgaaggaatccataactcttgaaaatgtgtgtttgatccatattttttcatagagagggagagaagttttgttctccataaccattgaacaaatcactt |
206 |
Q |
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| T |
37012617 |
gtgaaggaatccataactcttgaaaatgtgtgtttgacccatattttttcatagagagggagagaagttttgttctccataaccattgaacaaatcactt |
37012716 |
T |
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| Q |
207 |
aggaaattactcaagccacaaat |
229 |
Q |
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| T |
37012717 |
aggaaattactcaagccacaaat |
37012739 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 37028491 - 37028566
Alignment:
| Q |
95 |
aggaggagcaatgtgaaggaatccataactcttgaaaatgtgtgtttgatccatattttttcatagagagggagag |
170 |
Q |
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|||| |||||| |||||||||||||| |||||||||||||||| ||| | | | | ||| |||||||||||||||| |
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| T |
37028491 |
aggaagagcaaagtgaaggaatccatcactcttgaaaatgtgtatttcaacaaaaatttatcatagagagggagag |
37028566 |
T |
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