View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3860_high_5 (Length: 368)

Name: NF3860_high_5
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3860_high_5
NF3860_high_5
[»] chr8 (13 HSPs)
chr8 (8-351)||(5718317-5718661)
chr8 (13-351)||(5686170-5686498)
chr8 (264-351)||(5656702-5656788)
chr8 (73-218)||(29414351-29414486)
chr8 (74-214)||(24068125-24068256)
chr8 (144-261)||(25124400-25124518)
chr8 (74-218)||(36947229-36947367)
chr8 (142-214)||(38585096-38585168)
chr8 (141-224)||(26415579-26415662)
chr8 (76-122)||(35393710-35393756)
chr8 (141-221)||(33543375-33543454)
chr8 (135-193)||(43063881-43063939)
chr8 (233-261)||(24068076-24068104)
[»] chr7 (12 HSPs)
chr7 (74-221)||(21882770-21882909)
chr7 (77-220)||(23730507-23730640)
chr7 (135-224)||(1985027-1985116)
chr7 (74-212)||(8123659-8123789)
chr7 (74-212)||(46297581-46297711)
chr7 (75-221)||(22631449-22631587)
chr7 (74-221)||(24250455-24250594)
chr7 (141-221)||(46413744-46413827)
chr7 (74-221)||(20125558-20125697)
chr7 (170-221)||(44601056-44601107)
chr7 (82-218)||(23611754-23611881)
chr7 (83-220)||(19511387-19511516)
[»] chr1 (16 HSPs)
chr1 (74-261)||(29657332-29657512)
chr1 (83-221)||(10061569-10061699)
chr1 (73-221)||(43537146-43537289)
chr1 (78-221)||(35412998-35413133)
chr1 (74-221)||(21540042-21540181)
chr1 (74-221)||(23906607-23906746)
chr1 (141-220)||(11470051-11470130)
chr1 (83-214)||(35149672-35149795)
chr1 (146-211)||(33077719-33077784)
chr1 (73-194)||(49313574-49313687)
chr1 (142-224)||(26469972-26470054)
chr1 (135-174)||(13085089-13085128)
chr1 (164-212)||(4684518-4684566)
chr1 (169-224)||(9113458-9113514)
chr1 (78-123)||(35360380-35360425)
chr1 (136-204)||(47996699-47996767)
[»] chr5 (12 HSPs)
chr5 (74-260)||(25493787-25493966)
chr5 (73-224)||(3040258-3040401)
chr5 (73-218)||(30735325-30735462)
chr5 (135-224)||(30700868-30700957)
chr5 (74-224)||(40519147-40519288)
chr5 (73-224)||(30071738-30071881)
chr5 (140-215)||(7547292-7547366)
chr5 (93-261)||(20359898-20360061)
chr5 (135-224)||(34280104-34280193)
chr5 (77-126)||(35875827-35875876)
chr5 (74-126)||(21259186-21259238)
chr5 (78-124)||(43590976-43591022)
[»] chr3 (12 HSPs)
chr3 (74-224)||(34905814-34905956)
chr3 (74-261)||(45852894-45853074)
chr3 (141-221)||(26442976-26443056)
chr3 (141-224)||(18271961-18272044)
chr3 (142-221)||(1632836-1632915)
chr3 (74-217)||(48897685-48897820)
chr3 (99-224)||(2671896-2672013)
chr3 (135-267)||(31192080-31192213)
chr3 (140-221)||(1713979-1714060)
chr3 (73-126)||(3169336-3169387)
chr3 (142-190)||(40840680-40840728)
chr3 (161-198)||(3169272-3169309)
[»] scaffold0122 (1 HSPs)
scaffold0122 (74-218)||(18602-18738)
[»] chr2 (18 HSPs)
chr2 (74-261)||(20142936-20143116)
chr2 (74-224)||(38320198-38320340)
chr2 (74-224)||(37714391-37714533)
chr2 (74-218)||(13716714-13716850)
chr2 (74-218)||(32976024-32976162)
chr2 (141-224)||(14131183-14131266)
chr2 (139-224)||(19945722-19945807)
chr2 (145-224)||(27007200-27007279)
chr2 (79-212)||(4434270-4434398)
chr2 (136-224)||(27407444-27407532)
chr2 (140-224)||(35457426-35457510)
chr2 (141-212)||(3167923-3167994)
chr2 (153-220)||(31845453-31845520)
chr2 (148-223)||(5881430-5881505)
chr2 (74-180)||(37899545-37899643)
chr2 (141-224)||(31645094-31645178)
chr2 (72-123)||(31845401-31845452)
chr2 (183-261)||(31264827-31264906)
[»] chr6 (8 HSPs)
chr6 (71-216)||(6784708-6784845)
chr6 (79-222)||(32871753-32871888)
chr6 (74-221)||(28867153-28867292)
chr6 (97-211)||(6519231-6519337)
chr6 (141-215)||(2130499-2130573)
chr6 (74-261)||(34713469-34713649)
chr6 (150-261)||(3855696-3855807)
chr6 (78-216)||(11301808-11301938)
[»] chr4 (13 HSPs)
chr4 (141-224)||(42504192-42504275)
chr4 (74-224)||(24060544-24060686)
chr4 (87-206)||(25817646-25817757)
chr4 (93-261)||(5288509-5288670)
chr4 (141-224)||(30220727-30220809)
chr4 (78-224)||(16528535-16528676)
chr4 (141-205)||(19482545-19482609)
chr4 (74-221)||(37762773-37762914)
chr4 (135-205)||(29065295-29065365)
chr4 (140-224)||(51304297-51304381)
chr4 (74-213)||(41545383-41545514)
chr4 (74-205)||(2765385-2765505)
chr4 (85-126)||(41485716-41485757)
[»] scaffold0194 (1 HSPs)
scaffold0194 (151-261)||(27069-27180)
[»] scaffold0018 (1 HSPs)
scaffold0018 (83-198)||(69949-70056)
[»] scaffold0247 (1 HSPs)
scaffold0247 (144-180)||(19220-19256)
[»] scaffold0013 (1 HSPs)
scaffold0013 (307-351)||(88623-88667)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 5718661 - 5718317
Alignment:
Q  8 cgaagaatattgaaggataaaataaaacttgtacaataaacttgtatatacttcggtttattatttgagcattgctatttatcttgagagattttatcaa 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5718661 cgaaaaatattgaaggataaaataaaacttgtacaataaacttgtatatacttcggtttattatttgagcattggtatttatcttgagagattttatcaa 5718562  T
Q  108 gaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagc 207  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  5718561 gaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaatgtgttagc 5718462  T
Q  208 aaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttctcttattatttttgtatctttaattaagttcttatttatgttttg 306  Q
    |||||||||||||| |||       |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5718461 aaatacactgtcttaaaattttcttgatatagtttgtcattgtatctatcatttctcttattatttttgtatctttaattaagttcgtatttatgttttg 5718362  T
Q  307 gcaggaactcacagcagtattcatgaaaaactgcatgctgcatta 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5718361 gcaggaactcacagcagtattcatgaaaaactgcatgctgcatta 5718317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 5686498 - 5686170
Alignment:
Q  13 aatattgaaggataaaataaaacttgtacaataaacttgtatatacttcggtttattatttgagcattgctatttatcttgagagattttatcaagaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  5686498 aatattgaaggataaaataaaacttgtacaataaacttgtatatacttcggtttattatttgagcattgctatttatcttgaga-aatttatcaagaatt 5686400  T
Q  113 gatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaata 212  Q
    ||||||||||||||| || || |||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||    
T  5686399 gatcaagaaaaggtcccaaactctcaatcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgttagcaaata 5686300  T
Q  213 cactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttctcttattatttttgtatctttaattaagttcttatttatgttttggcagg 311  Q
    | || |||| |||       |||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5686299 cgctatcttgaaattttcttgataga----------gtatctatcatttctcttattatttttgtatctttaattaagttcttatttatgttttggcagg 5686210  T
Q  312 aactcacagcagtattcatgaaaaactgcatgctgcatta 351  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5686209 aactcacagcagtattcatgaaaaactgcatgctgcatta 5686170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 5656788 - 5656702
Alignment:
Q  264 ttattatttttgtatctttaattaagttcttatttatgttttggcaggaactcacagcagtattcatgaaaaactgcatgctgcatta 351  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  5656788 ttattatttttgtatctttaattaagttcttatttatgttt-ggcaggaactcacgggagtattcatgaaaaactgcatgctgcatta 5656702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 29414351 - 29414486
Alignment:
Q  73 tgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagg 172  Q
    |||||||||||||||||||  |||| ||||||||| ||||||||||||||| ||||||| |        |||||||||||||||||| || |||||||||    
T  29414351 tgagcattgctatttatct--agagtttttatcaaaaattgatcaagaaaatgtctcagcc--------aattaaatttgttatttgccgaaaatcaagg 29414440  T
Q  173 gaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
     |||||||| ||| |||||||||||| |||||| ||||| ||||||    
T  29414441 aaggtaatggtgtttaattaaggaaaggtgttaacaaatgcactgt 29414486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 24068256 - 24068125
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||| ||        ||||| ||||||||||||||||||| |  ||||||| ||    
T  24068256 gagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagt--------ctcagccaattaaatttgttatttg-ccaaaatcaaagg 24068166  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaataca 214  Q
    |||| ||| ||||||||||||||||  |||||| |||||||    
T  24068165 aggtgatggtgtgtaattaaggaaagatgttaggaaataca 24068125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 25124400 - 25124518
Alignment:
Q  144 ttaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttg 242  Q
    ||||| |||||||||| ||||||||||| ||| |||||||||||||||||| ||| || ||| ||||||||||||||| |||       |||| | ||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttg 25124499  T
Q  243 tcactgtatctatcatttc 261  Q
    |||||||||||||||||||    
T  25124500 tcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 36947367 - 36947229
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||| ||||||||| ||||||||||||||||||||||| || ||||  | |       ||| |||||||||||||||||| | |  |||| |||||    
T  36947367 gagcattgttatttatctagagagattttatcaagaattgataaaaaaaaaatgta------tcaatcaattaaatttgttattggccaaaaatgaaggg 36947274  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
    |||||||||||| ||||||| |||||||||||  |||||||||||    
T  36947273 aggtaatgatgtataattaaagaaatgtgttaataaatacactgt 36947229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 38585168 - 38585096
Alignment:
Q  142 aattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaataca 214  Q
    |||||||||||| ||||| |||||||||| |||||||||  ||||||||||| |||| |||||||||||||||    
T  38585168 aattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaaagtgttagcaaataca 38585096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 26415579 - 26415662
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||| ||||||| ||||||| ||  ||| |||||||||||||||||||||| || |||||||||| ||| |||||||    
T  26415579 caattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactatcttaaa 26415662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 35393710 - 35393756
Alignment:
Q  76 gcattgctatttatcttgagagattttatcaagaattgatcaagaaa 122  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaaa 35393756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 33543375 - 33543454
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||| |||||||||||||| | ||||||||||||| ||||| |||||||||||  ||| |||||| |||||| ||||||||    
T  33543375 caataaaatttgttatttggctgaaatcaagggagataatg-tgtgtaattaaaaaaaggtgttaacaaatatactgtctt 33543454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 43063939 - 43063881
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaa 193  Q
    ||||||||||||||||| |||||||| | |||||||   |||||||||||| |||||||    
T  43063939 ctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaa 43063881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 24068104 - 24068076
Alignment:
Q  233 atacagtttgtcactgtatctatcatttc 261  Q
    |||||||||||||||||||||||||||||    
T  24068104 atacagtttgtcactgtatctatcatttc 24068076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 21882909 - 21882770
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||| |        |||||||||||||||||| |||||||||||||    
T  21882909 gagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagcc--------aattaaatttgttatttgccggaaatcaaggg 21882818  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  21882817 aggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtctt 21882770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 23730640 - 23730507
Alignment:
Q  77 cattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggagg 176  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| || ||||     ||   ||||||||| |||||||||||||||||||| ||||    
T  23730640 cattgctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcag-----ca---aattaaattcgttatttgtcggaaatcaagagagg 23730549  T
Q  177 taatgatgtgtaattaaggaaatgtgttagcaaatacactgtct 220  Q
    |||||  ||||||||||||||| |||||| ||||||||||||||    
T  23730548 taatg--gtgtaattaaggaaaggtgttaacaaatacactgtct 23730507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 1985027 - 1985116
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||    
T  1985027 ctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaa 1985116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 8123659 - 8123789
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| ||        |||||||||||||||||||||||||| |||||| || ||    
T  8123659 gagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgt--------ctcagtcaattaaatttgttatttgttggaaattaatgg 8123750  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaata 212  Q
    || |||| |||| ||||||| |||| |||||||||||||    
T  8123751 agataataatgtataattaaagaaaggtgttagcaaata 8123789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 46297581 - 46297711
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||| |||||||||| ||||| |||||||||||||| |||||||||| ||||||| |        | || |||||||||||||||| ||||||||||    
T  46297581 gagcattactatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagcc--------attttaatttgttatttgtcgaaaatcaaggg 46297672  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaata 212  Q
    || ||||| ||||||||||||||||||||||||||||||    
T  46297673 agttaatggtgtgtaattaaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 22631449 - 22631587
Alignment:
Q  75 agcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggga 174  Q
    ||||||| |||||||||  ||| ||||||| ||||||||||||||||||| |||||| |        ||||||||||||||||||||||||||||| |||    
T  22631449 agcattgttatttatctaaagatattttattaagaattgatcaagaaaagatctcagcc--------aattaaatttgttatttgtcggaaatcaaagga 22631540  T
Q  175 ggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    | ||||  |||||||||||||||| |||||||| ||||||| |||||    
T  22631541 gataatagtgtgtaattaaggaaaggtgttagctaatacaccgtctt 22631587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 24250594 - 24250455
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||| ||| |     ||   ||||| |||||||||||||||||||||||||||    
T  24250594 gagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatctta-----tc---caatttaatttgttatttgtcggaaatcaaggg 24250503  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||| | |||||||||| |||  | |||| |||||| |||||||    
T  24250502 aggtaatggtttgtaattaagaaaagatattagtaaatacgctgtctt 24250455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 46413827 - 46413744
Alignment:
Q  141 caattaaatttgttatttgt---cggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  46413827 caattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtctt 46413744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 20125558 - 20125697
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||| || |||| |        |||||||||||||| ||||| ||||| || |     
T  20125558 gagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagcc--------aattaaatttgttacttgtcagaaattaaaga 20125649  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    || ||||| ||||||||||| |||| || |||||||||||||||||||    
T  20125650 agataatggtgtgtaattaaagaaaggtattagcaaatacactgtctt 20125697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 44601056 - 44601107
Alignment:
Q  170 agggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  44601056 agggagataatgatgtgtaattaagaaaatgtgttagcaaatacactgtctt 44601107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 23611881 - 23611754
Alignment:
Q  82 ctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatg 181  Q
    |||||||||| ||||| |||||| ||||||| |||||||||| ||||||      ||   |||||||||||||||||| ||||||||||| |||||||||    
T  23611881 ctatttatctagagagtttttattaagaatttatcaagaaaatgtctcaa-----ca---aattaaatttgttatttgacggaaatcaagagaggtaatg 23611790  T
Q  182 atgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
       |||||||||| ||| |||||| ||||||||||||    
T  23611789 -gatgtaattaagtaaaggtgttaacaaatacactgt 23611754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 19511387 - 19511516
Alignment:
Q  83 tatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatga 182  Q
    ||||||||| ||||||||||||||||||||||| ||||||| || | || |        |||||||||| |||||| | ||||||||| |||| ||||      
T  19511387 tatttatctcgagagattttatcaagaattgattaagaaaaagttttagcc--------aattaaatttattattttttggaaatcaatggagataatag 19511478  T
Q  183 tgtgtaattaaggaaatgtgttagcaaatacactgtct 220  Q
    || ||||||||||||| ||||||  |||||||||||||    
T  19511479 tgagtaattaaggaaaggtgttaataaatacactgtct 19511516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 29657332 - 29657512
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||| |||       |||||||||||||||||| || ||||||| ||    
T  29657332 gagcattcctatttatctagagagattttatcaaaaattggtcaagaaaaggtctca-acc-------aattaaatttgttatttgccgaaaatcaaagg 29657423  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||       |||| | |||||||||||||||||||||||    
T  29657424 aggtaatgatatgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttc 29657512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 10061569 - 10061699
Alignment:
Q  83 tatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatga 182  Q
    ||||||||| ||||| |||||||||||||| ||||| |||| |||||| |||       |||||||||||||||||| | ||||||||||||||||||||    
T  10061569 tatttatctagagagtttttatcaagaatttatcaaaaaaaagtctca-acc-------aattaaatttgttatttgacagaaatcaagggaggtaatga 10061660  T
Q  183 tgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10061661 tgtgtaattaaggaaatgtgttagcaaataaactgtctt 10061699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 43537289 - 43537146
Alignment:
Q  73 tgagcattgctatttatcttgagagatttt---atcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatca 169  Q
    ||||||||| ||||||||| ||||| ||||   |||||||||| |||||||||||||||||| |        |||||||||||||||||| |||||||||    
T  43537289 tgagcattgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagcc--------aattaaatttgttatttgccggaaatca 43537198  T
Q  170 agggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  43537197 agggaggtaatggtgtgtaattaaagaaatgtgttaacaaatacactgtctt 43537146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 35412998 - 35413133
Alignment:
Q  78 attgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggt 177  Q
    |||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| |||       |||||||||||||||||| |||||||||||||||||    
T  35412998 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtctca-acc-------aattaaatttgttatttgacggaaatcaagggaggt 35413089  T
Q  178 aatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||  |||||||||||||||| |||||| |||||||||| ||||    
T  35413090 aatagtgtgtaattaaggaaaggtgttaacaaatacactctctt 35413133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 21540042 - 21540181
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||| | ||||| |||||||||||| | |||||||||| ||||||| |        |||||||||||||||||| ||||||| |||||    
T  21540042 gagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagcc--------aattaaatttgttatttggcggaaattaaggg 21540133  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    || |||||| |||||||||| |||| |||||| |||||||||||||||    
T  21540134 agataatgaagtgtaattaaagaaaggtgttaacaaatacactgtctt 21540181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 23906746 - 23906607
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||| || |||| |        |||||||||||||||||| |  |||||||| |    
T  23906746 gagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagcc--------aattaaatttgttatttgccacaaatcaagag 23906655  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||| ||||||||||| |||| ||||||||||||||| ||||||    
T  23906654 aggtaatggtgtgtaattaaagaaaggtgttagcaaatacattgtctt 23906607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 11470051 - 11470130
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtct 220  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||  ||||||| |||||    
T  11470051 caattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaatatgttaagaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 35149795 - 35149672
Alignment:
Q  83 tatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatga 182  Q
    ||||||||| ||||| |||||||||||||| ||||||||||  ||| | ||       ||||||||||||||||||| |  |||||||||||| ||||||    
T  35149795 tatttatctagagagtttttatcaagaatttatcaagaaaatatctta-ac-------caattaaatttgttatttgacataaatcaagggagataatga 35149704  T
Q  183 tgtgtaattaaggaaatgtgttagcaaataca 214  Q
    ||| |||||||||||| |||||||||||||||    
T  35149703 tgtataattaaggaaaggtgttagcaaataca 35149672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 33077719 - 33077784
Alignment:
Q  146 aaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaat 211  Q
    ||||||| |||||| || |||||||| |||||||||||||||||||||  ||||||||||||||||    
T  33077719 aaatttgatatttgccgaaaatcaagagaggtaatgatgtgtaattaaataaatgtgttagcaaat 33077784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 49313574 - 49313687
Alignment:
Q  73 tgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagg 172  Q
    ||||||||||||||||||   |||| ||||||||||||||||||||||||| ||        |||| | |||||||||||||||| |||||||||||| |    
T  49313574 tgagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgt--------ctcaattaattaaatttgttattagtcggaaatcaaag 49313665  T
Q  173 gaggtaatgatgtgtaattaag 194  Q
     || |||||| || ||||||||    
T  49313666 aagataatgaagtttaattaag 49313687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 26469972 - 26470054
Alignment:
Q  142 aattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||||||||| ||||||   | ||||||| | || ||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  26469972 aattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaaggtgttagcaaatacactgttttaaa 26470054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 13085128 - 13085089
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaaggga 174  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  13085128 ctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 4684518 - 4684566
Alignment:
Q  164 aaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaata 212  Q
    ||||||| |||| ||||| |||||||||||||||| |||||||||||||    
T  4684518 aaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaata 4684566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 9113514 - 9113458
Alignment:
Q  169 aagggaggtaatgatgtgtaattaaggaaatgtgttagc-aaatacactgtcttaaa 224  Q
    ||||||||||||||| |||||||||||||| || ||||| ||||||||| |||||||    
T  9113514 aagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaa 9113458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 35360380 - 35360425
Alignment:
Q  78 attgctatttatcttgagagattttatcaagaattgatcaagaaaa 123  Q
    |||| ||||||| | ||||||||||||||| |||||||||||||||    
T  35360380 attgttatttatttagagagattttatcaataattgatcaagaaaa 35360425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 47996699 - 47996767
Alignment:
Q  136 tcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtt 204  Q
    |||||||||||||||| ||||| |  |||||| |||||||||||| |  |||||||||| ||| |||||    
T  47996699 tcagtcaattaaatttcttattggctggaaattaagggaggtaatcaaatgtaattaagaaaaggtgtt 47996767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 25493787 - 25493966
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |        ||||||||||||| |||||| |||||||| ||    
T  25493787 gagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagcc--------aattaaatttgttctttgtcagaaatcaaagg 25493878  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcattt 260  Q
    |||||||| ||||||||||||||||||| ||| |||||| |||||||| |||       ||||||  |||||||||||||||||||||    
T  25493879 aggtaatggtgtgtaattaaggaaatgtattaacaaatatactgtcttgaaattttctggatacatgttgtcactgtatctatcattt 25493966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 3040401 - 3040258
Alignment:
Q  73 tgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagg 172  Q
    ||||||||| |||||| || ||||| |||||||||||||| |||||||||| ||||||         ||||||||||||||||| ||  | |||||||||    
T  3040401 tgagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaa--------tcaattaaatttgttatctggtgaaaatcaagg 3040310  T
Q  173 gaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  3040309 gaggtaatggtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaa 3040258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 30735462 - 30735325
Alignment:
Q  73 tgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagg 172  Q
    ||||||||||||||||||| || || |||||| ||||||  |||||||||| ||||||         |||||||||||||||||||| ||||||||||||    
T  30735462 tgagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaa--------tcaattaaatttgttatttggcggaaatcaagg 30735371  T
Q  173 gaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
    ||||||||| || ||||||||| ||| |||||||||||||||||||    
T  30735370 gaggtaatgctgggtaattaagaaaaagtgttagcaaatacactgt 30735325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 30700957 - 30700868
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||| |||||||||||||||||||| || |||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  30700957 ctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaattaagaaaaggtgttagcaaatacactgtcttaaa 30700868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 40519147 - 40519288
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| ||||| |||||||||||||| || ||||| | |||||| |||       ||||||||||||||||||  |||||||| |||    
T  40519147 gagcattgctatttatctagagagtttttatcaagaatttattaagaataagtctca-acc-------aattaaatttgttatttgatggaaatca-ggg 40519237  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||||||||||||| |||  | || |||||||||||||||||||    
T  40519238 aggtaatgatgtgtaattaagaaaaaatattggcaaatacactgtcttaaa 40519288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 30071738 - 30071881
Alignment:
Q  73 tgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagg 172  Q
    |||||||||||||||||||  |||| ||||||| |||||| | ||||||||||||||| |||       |||||||||| |||||||| |||||||| ||    
T  30071738 tgagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctca-acc-------aattaaatttattatttgttggaaatcatgg 30071829  T
Q  173 gaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
     ||||| || ||||||||| |||||| | ||||||||||||| |||||||||    
T  30071830 aaggtagtggtgtgtaattgaggaaaggagttagcaaatacattgtcttaaa 30071881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 7547292 - 7547366
Alignment:
Q  140 tcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacac 215  Q
    ||||| |||||||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  7547292 tcaatcaaatttgttatttgacggaaatcaagg-agataatgatttgtaattaaggaaatgtgttagcaaatacac 7547366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 93 - 261
Target Start/End: Original strand, 20359898 - 20360061
Alignment:
Q  93 gagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgtt--atttgtcggaaatcaagggaggtaatgatgtgtaat 190  Q
    ||||||||||||||||||||||||||||||| ||        ||| ||||||||||| ||||  ||||  | |||||||| |||| ||||| ||||||||    
T  20359898 gagagattttatcaagaattgatcaagaaaatgt--------ctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaat 20359989  T
Q  191 taaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    ||| |||| ||||||||||||| || ||||| |||       |||||||||||||||| |||||||||||||    
T  20359990 taaagaaaggtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttc 20360061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 34280193 - 34280104
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||| |||||||||||||||||||| ||||||| |||| || ||||| | ||||||||||||||  ||||| ||||||||||| ||||||    
T  34280193 ctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaa 34280104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 35875876 - 35875827
Alignment:
Q  77 cattgctatttatcttgagagattttatcaagaattgatcaagaaaaggt 126  Q
    ||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  35875876 cattgctatttatttagagagattttatcaagaattgatcaaggaaaggt 35875827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 21259186 - 21259238
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggt 126  Q
    |||||||  ||||||||| ||||| ||||||||||||||||| ||||||||||    
T  21259186 gagcatttatatttatctagagagtttttatcaagaattgataaagaaaaggt 21259238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 43590976 - 43591022
Alignment:
Q  78 attgctatttatcttgagagattttatcaagaattgatcaagaaaag 124  Q
    |||||||||||||||| |||||| ||| |||||||||||| ||||||    
T  43590976 attgctatttatcttgcgagattatattaagaattgatcacgaaaag 43591022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 34905814 - 34905956
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||| |        | ||||||||||||||||||  ||||||| ||    
T  34905814 gagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagcc--------agttaaatttgttatttgtcaaaaatcaaagg 34905905  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  34905906 aggtaatgatgtataattaaggaaaggtgttagcaaatacactgtcttaaa 34905956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 261
Target Start/End: Complemental strand, 45853074 - 45852894
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||| |||||||||  ||||||||||||||||||| |||||||||| |||||| |||       |||||||||| |||||||   | |||||||||    
T  45853074 gagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctca-acc-------aattaaatttattatttgcttgcaatcaaggg 45852983  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    || ||||||| |||||||||| ||| |||||||||||||||| ||||| |||       |||||||||||||||| |||||||||||||    
T  45852982 agataatgatatgtaattaagaaaaggtgttagcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttc 45852894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 26442976 - 26443056
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||| |||||| |||||||||||||||    
T  26442976 caattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgtctt 26443056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 18272044 - 18271961
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||| |||||||||||||| || |||||||    
T  18272044 caattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctatcttaaa 18271961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 1632836 - 1632915
Alignment:
Q  142 aattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||||||||||||  |||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||||||||    
T  1632836 aattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaacgtgttaacaaatacactgtctt 1632915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 48897820 - 48897685
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |||| || ||||     ||   | ||||||||||||||||||| ||||||| ||    
T  48897820 gagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcag-----ca---agttaaatttgttatttgtcgaaaatcaatgg 48897729  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactg 217  Q
    |  ||||| |||||||||||| |||  |||||||||||| ||||    
T  48897728 aaataatggtgtgtaattaagaaaagatgttagcaaatagactg 48897685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 2671896 - 2672013
Alignment:
Q  99 ttttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaa 198  Q
    |||||||||||||||||||||||||||| |||| |        |||||||||||||||| |  | ||||||  |||| ||||||||||||||||||||||    
T  2671896 ttttatcaagaattgatcaagaaaaggtgtcagcc--------aattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaa 2671987  T
Q  199 tgtgttagcaaatacactgtcttaaa 224  Q
      ||||| ||||||||||||||||||    
T  2671988 gatgttaacaaatacactgtcttaaa 2672013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 31192080 - 31192213
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnnga 233  Q
    |||| ||||||||||||||||||| | | |||| ||| ||| ||||  ||||||||||||||||  | ||||||||||| ||||||| |||       ||    
T  31192080 ctcaatcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaattttcttga 31192179  T
Q  234 tacagtttgtcactgtatctatcatttctcttat 267  Q
    |||||||| ||||||||||||||||||| |||||    
T  31192180 tacagtttatcactgtatctatcatttcccttat 31192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 1714060 - 1713979
Alignment:
Q  140 tcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||||||||||||||| ||||||| ||||||| ||||  ||| |||||||| |||| |||||  ||||||||||||||    
T  1714060 tcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtctt 1713979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 3169387 - 3169336
Alignment:
Q  73 tgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggt 126  Q
    |||| ||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  3169387 tgagaattgctatttatct--agagtttttatcaagaattgatcaagaaaaggt 3169336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 40840728 - 40840680
Alignment:
Q  142 aattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaat 190  Q
    |||||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  40840728 aattaaatttattatttggcggaaatcaaaggaggtaatgatgtataat 40840680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 3169309 - 3169272
Alignment:
Q  161 cggaaatcaagggaggtaatgatgtgtaattaaggaaa 198  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  3169309 cggaaatcaagggcggtaatgaggtgtaattaaggaaa 3169272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 18602 - 18738
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||| |||| ||        ||||||||||||||||||||||| |||| |||||    
T  18602 gagcattgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttag--------tcaattaaatttgttatttgtcgaaaattaaggg 18693  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
    || ||||| || |||||||||||||||||||||||||||||||||    
T  18694 agataatggtgagtaattaaggaaatgtgttagcaaatacactgt 18738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 20142936 - 20143116
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||| ||||||||| ||||| |||||||||||||| |||||||||| |||||| |||       |||||||||| ||||||| ||||||||||||     
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctca-acc-------aattaaatttattatttggcggaaatcaagga 20143027  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| |||| |||       |||| | |||||||||||||||||||||||    
T  20143028 aggtaatgatgtgtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttc 20143116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 38320340 - 38320198
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||| | ||||||||| ||||| |||||||||||||| ||||||||||| | ||| |||       ||||||||||||||||||  ||||||||| ||    
T  38320340 gagcatcgttatttatctagagagtttttatcaagaatttatcaagaaaagttttca-acc-------aattaaatttgttatttggtggaaatcaaagg 38320249  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  38320248 aggtaatgatgtgtaaataaggaaatgtgttatcaaatacactgtcttaaa 38320198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 37714391 - 37714533
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| ||||| |||||||||  ||| ||||||||||||| ||| |||       ||||||||||||||||||  ||||||||| ||    
T  37714391 gagcattgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatca-acc-------aattaaatttgttatttgatggaaatcaaagg 37714482  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    || ||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  37714483 agataatggtgtgtaattaaggaaaggtgttagcaaatacactgccttaaa 37714533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 13716850 - 13716714
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||| |||       |||||||||||| ||||| || ||||||| ||    
T  13716850 gagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctca-acc-------aattaaatttgtgatttggcgaaaatcaaagg 13716759  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
    |||||||  |||||||||||| ||| |||||||||||||||||||    
T  13716758 aggtaatagtgtgtaattaagaaaaggtgttagcaaatacactgt 13716714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 32976162 - 32976024
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||       |||||||||||||||||||||||||||||| |     
T  32976162 gagcaatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctca-ac-------caattaaatttgttatttgtcggaaatcaaaga 32976071  T
Q  174 aggt--aatgatgtgtaattaaggaaatgtgttagcaaatacactgt 218  Q
    ||||  |||| | |||||||||| ||| ||||||| |||||||||||    
T  32976070 aggtaaaatggtatgtaattaagaaaaggtgttagtaaatacactgt 32976024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 14131183 - 14131266
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  14131183 caattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtgttagcaaatacactatcttaaa 14131266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 19945807 - 19945722
Alignment:
Q  139 gtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||  | ||| ||||||||||||||||||    
T  19945807 gtcaattaaatttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaaagatattaacaaatacactgtcttaaa 19945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 27007200 - 27007279
Alignment:
Q  145 taaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||||||| ||||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||||||||||    
T  27007200 taaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgtcttaaa 27007279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 4434270 - 4434398
Alignment:
Q  79 ttgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaag---ggag 175  Q
    |||||||||||   |||||||||||| |||||||||||||||||||||| |||        |||||||||||||||||||| || ||||||||   ||||    
T  4434270 ttgctatttattgagagagattttattaagaattgatcaagaaaaggtcccag--------tcaattaaatttgttatttgccgaaaatcaagggaggag 4434361  T
Q  176 gtaatgatgtgtaattaaggaaatgtgttagcaaata 212  Q
    |||||| |||||||||||| ||||||||| |||||||    
T  4434362 gtaatggtgtgtaattaagtaaatgtgttggcaaata 4434398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 27407444 - 27407532
Alignment:
Q  136 tcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||| ||||||||||||||||||  |||||||||||| || ||||| ||||||||||||||||||| |||||||||||| | |||||||    
T  27407444 tcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaatgtattagcaaatacagtatcttaaa 27407532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 35457426 - 35457510
Alignment:
Q  140 tcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||||||||||| ||||||  |||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||| |||||||    
T  35457426 tcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgtgttaacaaatatactatcttaaa 35457510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 3167923 - 3167994
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaata 212  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||    
T  3167923 caattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggtgttagcaaata 3167994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 31845453 - 31845520
Alignment:
Q  153 ttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtct 220  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||  ||||||||||||||||||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtct 31845520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 5881505 - 5881430
Alignment:
Q  148 atttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaa 223  Q
    |||||||||||  |||||||||||| | ||||||||||||||||||||||| || |||||||||| ||||| ||||    
T  5881505 atttgttatttaccggaaatcaaggaatgtaatgatgtgtaattaaggaaaggtattagcaaatatactgtattaa 5881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 37899643 - 37899545
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||||||||||||| ||||| ||||||||| |||| ||||||||||||| ||| ||       ||||||||||||| |||||||| ||||||| ||    
T  37899643 gagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttca-ac-------caattaaatttgtgatttgtcgaaaatcaaagg 37899552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 31645178 - 31645094
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaa-tgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||| | ||||| |||||||||||  | ||||||||||||||||||| |||  ||||||||||||||| | |||||||    
T  31645178 caattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaattaagaaaagggtgttagcaaatacattctcttaaa 31645094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 31845401 - 31845452
Alignment:
Q  72 ttgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaa 123  Q
    |||||||||| ||||||||  ||||||||||||||||||||||| |||||||    
T  31845401 ttgagcattgttatttatccagagagattttatcaagaattgattaagaaaa 31845452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 31264827 - 31264906
Alignment:
Q  183 tgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    |||||||||||||||| ||||||||||||||||| |||| |||       |||| | |||||||||||||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttc 31264906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 6784845 - 6784708
Alignment:
Q  71 tttgagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaa 170  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| ||||| ||||| |||||| |        |||||||||||||||||||||||||||||    
T  6784845 tttgagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagcc--------aattaaatttgttatttgtcggaaatcaa 6784754  T
Q  171 gggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacact 216  Q
    ||||| ||||| |||||||||||| ||| |||||||||||||||||    
T  6784753 gggagataatggtgtgtaattaagaaaaggtgttagcaaatacact 6784708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 32871888 - 32871753
Alignment:
Q  79 ttgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggta 178  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||| ||| |||       |||||||||||||||||| ||||||||||||||||||    
T  32871888 ttgctatttatctagagagtttttatcaagaatttatcaagaaaaggtttca-acc-------aattaaatttgttatttgacggaaatcaagggaggta 32871797  T
Q  179 atgatgtgtaattaaggaaatgtgttagcaaatacactgtctta 222  Q
    ||  ||||||||||||||||  |||||| |||||||||||||||    
T  32871796 atagtgtgtaattaaggaaaaatgttagtaaatacactgtctta 32871753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 28867153 - 28867292
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||| |||||||||  |||||||||||||||||||||| ||||||| || |||         ||||||||||||||||||||| ||||||||| ||    
T  28867153 gagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaa--------tcaattaaatttgttatttgttggaaatcaaagg 28867244  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |||||||  | ||||||||||||||||| |||||||||||| ||||||    
T  28867245 aggtaatagtatgtaattaaggaaatgttttagcaaatacattgtctt 28867292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 6519231 - 6519337
Alignment:
Q  97 gattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaagga 196  Q
    ||||||||||| ||||||||||||||| ||||||        ||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||| |    
T  6519231 gattttatcaaaaattgatcaagaaaatgtctca--------gtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaa 6519322  T
Q  197 aatgtgttagcaaat 211  Q
    |||| ||||||||||    
T  6519323 aatgagttagcaaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 2130573 - 2130499
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacac 215  Q
    ||||||||||||||||||| |||||||||| |||||| ||  |||||||||||||||| ||||||||||||||||    
T  2130573 caattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaaggtgttagcaaatacac 2130499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 34713469 - 34713649
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||||||||||||   ||||| |||||||||||||| |||||||||  ||||||    ||     |||||||||||||||||| || ||||||||||    
T  34713469 gagcattgctatttattcagagagtttttatcaagaatttatcaagaaattgtctcaa---ct-----aattaaatttgttatttggcgaaaatcaaggg 34713560  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    | |||||| |||||| ||||| ||| |||||| |||||||||| |||| |||       |||| | |||||||||||||||||||||||    
T  34713561 atgtaatggtgtgtatttaagaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttc 34713649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 3855807 - 3855696
Alignment:
Q  150 ttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactg 248  Q
    |||||||||| ||||||| |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||       |||| | ||||||||||    
T  3855807 ttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtgttagc-aatacactgtcttgaaattttcttgataaattttgtcactg 3855709  T
Q  249 tatctatcatttc 261  Q
    |||||||||||||    
T  3855708 tatctatcatttc 3855696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 11301808 - 11301938
Alignment:
Q  78 attgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggt 177  Q
    |||||||||||| | ||||  ||||||||||||||||||| ||||||||        ||||||||||| |||||||||||| ||| ||||||||  ||||    
T  11301808 attgctatttatatagagaatttttatcaagaattgatcatgaaaaggt--------ctcagtcaattgaatttgttatttctcgaaaatcaagcaaggt 11301899  T
Q  178 aatgatgtgtaattaaggaaatgtgttagcaaatacact 216  Q
    |||  | | ||||||||||||  |||||| |||||||||    
T  11301900 aatagtatataattaaggaaagatgttaggaaatacact 11301938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 42504275 - 42504192
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  42504275 caattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttaaa 42504192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 24060544 - 24060686
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    |||||||| |||||||||  |||  ||||||||||||||||||||||||| |||| ||   ||     |||||||||||||||| ||  |||||||||||    
T  24060544 gagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaag---ct-----aattaaatttgttattggttagaaatcaaggg 24060635  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    || ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  24060636 agataatggtgtgtaattaaggaaatgtgttagcaaatacactgttttaaa 24060686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 25817646 - 25817757
Alignment:
Q  87 tatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtg 186  Q
    ||||| |||| |||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||| ||||||||| ||||    
T  25817646 tatctagagacattttatcaagaattgatcaagaaaaggtctcagcc--------aattaaatttgttatttgacggaaatcaagtgaggtaatggtgtg 25817737  T
Q  187 taattaaggaaatgtgttag 206  Q
    |||||||| |||||||||||    
T  25817738 taattaagaaaatgtgttag 25817757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 261
Target Start/End: Original strand, 5288509 - 5288670
Alignment:
Q  93 gagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaatta 192  Q
    |||||||||||| |||||||||| ||||||| ||||||| |        |||||||||||||||||| || |||||||||||| ||||| ||||||||||    
T  5288509 gagagattttattaagaattgattaagaaaatgtctcagcc--------aattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaatta 5288600  T
Q  193 aggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgtatctatcatttc 261  Q
    |  ||||||||||||||||| || ||||| |||       |||||||||||||||| |||||||||||||    
T  5288601 aaaaaatgtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttc 5288670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 30220727 - 30220809
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    ||||||| ||||||||| | ||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||    
T  30220727 caattaattttgttattggccggaaatcaagggag-tattggtgtgtaattaaggaaaagtgttagcaaatacactgtcttaaa 30220809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 16528535 - 16528676
Alignment:
Q  78 attgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggga--- 174  Q
    |||||||||||||| ||||||||||||  |||||||||||| | |||||        ||||| ||||||||||||||||||||||||||||||  ||       
T  16528535 attgctatttatctagagagattttatttagaattgatcaatagaaggt--------ctcagccaattaaatttgttatttgtcggaaatcaaatgatat 16528626  T
Q  175 ggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
      ||||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  16528627 attaatggtgtgtaattaaagaaatgtgttaacaaatacactatcttaaa 16528676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 19482545 - 19482609
Alignment:
Q  141 caattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtta 205  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||    
T  19482545 caattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaaggtgtta 19482609  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 37762773 - 37762914
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||||||||||||||  |||| ||| |||||||||| |||||||||| | | || | ||      |||||||||||||||||| || || |||| ||    
T  37762773 gagcattgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaacc------aattaaatttgttatttgacgaaagtcaaagg 37762866  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt 221  Q
    |  |||||||||||||||||||||| |||||| |||||||| ||||||    
T  37762867 aaataatgatgtgtaattaaggaaaagtgttaacaaatacattgtctt 37762914  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 29065365 - 29065295
Alignment:
Q  135 ctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtta 205  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||| ||||||    
T  29065365 ctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgtta 29065295  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 51304381 - 51304297
Alignment:
Q  140 tcaattaaatttgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtcttaaa 224  Q
    |||||||||||||||||||| |||||||||| |||| |||||  ||| ||||||  |||| |||||||||||||| |||||||||    
T  51304381 tcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgcaattaaaaaaatatgttagcaaatacattgtcttaaa 51304297  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 41545383 - 41545514
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||| |||||||||| ||||| ||  |||||||||| ||||||||||||        |||||  ||||||||||||||||||| | |||||| | |     
T  41545383 gagcattactatttatctagagagtttccatcaagaatttatcaagaaaagg--------cctcaaccaattaaatttgttatttggcagaaatcgaaga 41545474  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgttagcaaatac 213  Q
    |||||||  ||||||||||| |||| ||||||||||||||    
T  41545475 aggtaattgtgtgtaattaatgaaaggtgttagcaaatac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 2765505 - 2765385
Alignment:
Q  74 gagcattgctatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaaggg 173  Q
    ||||||||||||||||   ||||| |||||| |||| |||||||||||||||||| || |        |||||||||||||||| | |  |||||| |||    
T  2765505 gagcattgctatttat---gagagtttttattaagagttgatcaagaaaaggtctaagcc--------aattaaatttgttattggccaaaaatcatggg 2765417  T
Q  174 aggtaatgatgtgtaattaaggaaatgtgtta 205  Q
    || ||||||||||||||||| |||| ||||||    
T  2765416 agataatgatgtgtaattaatgaaaggtgtta 2765385  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 41485716 - 41485757
Alignment:
Q  85 tttatcttgagagattttatcaagaattgatcaagaaaaggt 126  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggt 41485757  T

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Target: scaffold0194 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 27180 - 27069
Alignment:
Q  151 tgttatttgtcggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaatacactgtctt-aaannnnnnngatacagtttgtcactgt 249  Q
    ||||||||| ||||||||||||||| ||||   ||||||||||||||| |||||| ||||||||||||||| |||       |||| | |||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgt 27081  T
Q  250 atctatcatttc 261  Q
    ||||||||||||    
T  27080 atctatcatttc 27069  T

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Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 70056 - 69949
Alignment:
Q  83 tatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagaccctcagtcaattaaatttgttatttgtcggaaatcaagggaggtaatga 182  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| |||| |        |||||||||||||||| | ||||||||||||||| |||||     
T  70056 tatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagcc--------aattaaatttgttattggccggaaatcaagggagataatgg 69965  T
Q  183 tgtgtaattaaggaaa 198  Q
     |||||||||||||||    
T  69964 ggtgtaattaaggaaa 69949  T

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Target: scaffold0247 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 19220 - 19256
Alignment:
Q  144 ttaaatttgttatttgtcggaaatcaagggaggtaat 180  Q
    |||||||||||||||| |||||||||| |||||||||    
T  19220 ttaaatttgttatttgacggaaatcaaaggaggtaat 19256  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 88667 - 88623
Alignment:
Q  307 gcaggaactcacagcagtattcatgaaaaactgcatgctgcatta 351  Q
    |||||||||||||| ||||||||||||||| || ||| |||||||    
T  88667 gcaggaactcacaggagtattcatgaaaaattgtatgttgcatta 88623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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