View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_1 (Length: 587)
Name: NF3860_low_1
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_1 |
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| [»] scaffold0153 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 574
Target Start/End: Complemental strand, 1171226 - 1170649
Alignment:
| Q |
13 |
gaagaacacccagaagaaaaagtatggttttttctcccttacggaaattgatgcagcaaaactcctaatagaacttagtaatagcacaacctacttggat |
112 |
Q |
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| T |
1171226 |
gaagaacacccagaagaaaaagtatggttttttctcccttacggaaattgatgcagcaaaactcctaatagaacttagtaatagcacaacctacttggat |
1171127 |
T |
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| Q |
113 |
gaaaattgccatagcaatagcagcaagagcgtcacggtgcaatcgatgacacaacagagtaaggatagtgatgatatttcaccatcatcacctacagatt |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1171126 |
gaaaattgccatagcaatagcagcaacagcgtcacggtgcaatcaatgacgcaacggagtaaggatagtgatgatatttcaccatcatcacccacagatt |
1171027 |
T |
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| Q |
213 |
cagttgaggatgtgttggcagaaattgaagaagatgaacggttaaggaggaagaacaagaggtttcgatatgttgaagaagtgtatagagttacagatcc |
312 |
Q |
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| T |
1171026 |
cagttgaggatgtgttggcagaaattgaagaagatgaacggttaaggaggaagaacaagaggtttcgatatgttgaagaagtgtatagagttacagatcc |
1170927 |
T |
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| Q |
313 |
tatagttattgtacctccctttaataagaattaggtcacattaacaactgacttgtgttagaagttaactttagataggtttcatatagatgtagtatga |
412 |
Q |
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| T |
1170926 |
tatagttattgtacctccctttaataagaattaggtcacattaacaactgacttgtgttagaagttaactttagataggtttcatatagatgtaatatga |
1170827 |
T |
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| Q |
413 |
tcttcagatactttacaatagtatt----------------tattagctatacgcagaaacattatatttaattctgaacattatttatattcatgcata |
496 |
Q |
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| T |
1170826 |
tcttcagatactttacaatagtatttatttacaatagtatttattagctatacgcagaaacattatatttgattctgaacattgtttatattcatgcata |
1170727 |
T |
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| Q |
497 |
atannnnnnnggttaacaaattttgttgttggttcttcgagtagagatagaggaccaaattgtttaggttatcattga |
574 |
Q |
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| T |
1170726 |
atatttttttggttaacaaattttgttgctcgttcttcgagtagagatagaggaccaaattgtttaggttatcattga |
1170649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 441 - 574
Target Start/End: Complemental strand, 32890 - 32765
Alignment:
| Q |
441 |
tagctatacgcagaaacattatatttaattctgaacattatttatattcatgcataatannnnnnnggttaacaaattttgttgttggttcttcgagtag |
540 |
Q |
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| T |
32890 |
tagctatacgcaaaaacattatatttgattctgaacattgcttatattcatgcatatt--------ggttaacaaattttgttgatgattctttcattag |
32799 |
T |
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| Q |
541 |
agatagaggaccaaattgtttaggttatcattga |
574 |
Q |
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| T |
32798 |
agatagaggaccaaattgtttagggtgtcattga |
32765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 18099 - 18033
Alignment:
| Q |
433 |
gtatttattagctatacgcagaaacattatatttaattctgaacattatttatattcatgcataata |
499 |
Q |
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||||||| |||||||| || |||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
18099 |
gtatttactagctataagctgaaacattatatttgattctgaacattgcttatattcatgcataata |
18033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 433 - 569
Target Start/End: Complemental strand, 26094478 - 26094344
Alignment:
| Q |
433 |
gtatttattagctatacgcagaaacattatatttaattctgaacattatttatattcatgcataatannnnnnnggttaacaaattttgttgttggttct |
532 |
Q |
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| T |
26094478 |
gtatttactagatataagctgaaacattagatttgattctgaacattgcttatattaatgcataatatttttt-ggttaacaaattt-gttgctgattct |
26094381 |
T |
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| Q |
533 |
tcgagtagagatagaggaccaaattgtttaggttatc |
569 |
Q |
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| T |
26094380 |
tcaagtagagatagaggaccaaattatttaggttatc |
26094344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 569
Target Start/End: Complemental strand, 25995015 - 25994881
Alignment:
| Q |
433 |
gtatttattagctatacgcagaaacattatatttaattctgaacattatttatattcatgcataatannnnnnnggttaacaaattttgttgttggttct |
532 |
Q |
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||||||| |||||||| | ||||||||| |||| |||||||||| | | |||||||||||||||| ||||||||||||| |||| || |||| |
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| T |
25995015 |
gtatttactagctataaactgaaacattagatttgattctgaacagtgctaatattcatgcataatatttttt-ggttaacaaattt-gttgctgattct |
25994918 |
T |
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| Q |
533 |
tcgagtagagatagaggaccaaattgtttaggttatc |
569 |
Q |
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| T |
25994917 |
tcaagtagagatagaggaccaaattatttaggttatc |
25994881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 25553814 - 25553748
Alignment:
| Q |
433 |
gtatttattagctatacgcagaaacattatatttaattctgaacattatttatattcatgcataata |
499 |
Q |
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||||||| |||||||| || ||||||||| |||| |||||||||||| |||||||||||||||||| |
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| T |
25553814 |
gtatttactagctataagctgaaacattagatttgattctgaacattgcttatattcatgcataata |
25553748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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