View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_10 (Length: 315)
Name: NF3860_low_10
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 296
Target Start/End: Original strand, 23238306 - 23238593
Alignment:
| Q |
6 |
agcagcacagactatcatttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatgc |
105 |
Q |
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| T |
23238306 |
agcaccacacactatcatttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatgc |
23238405 |
T |
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| Q |
106 |
acaagttgcatttgcaaagccaaacggcgcaaaccttccactaaacaacggcattccacagaacaacaacaataatggaattctaaacaacaacaacctc |
205 |
Q |
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| T |
23238406 |
tcaagttgcatttgcaaagccaaatggcgcaaaccttcctctaaacaacggtgttccacagaacaataacaacaacggaatcctaaacaacaacaacctt |
23238505 |
T |
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| Q |
206 |
cctttcctaacaggactcagtggaaacacagggaatgtgttcaataataacaataataatgggaacaacaatttcccagtgacgaatatga |
296 |
Q |
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| T |
23238506 |
cctttcctaacaggactcagtgggaacacaggaaacgtgttc---aataacaataataatgggaacaacaatttcccagtgacgaatatga |
23238593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 296
Target Start/End: Complemental strand, 23214812 - 23214528
Alignment:
| Q |
6 |
agcagcacagactatcatttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatgc |
105 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23214812 |
agcaccacacactatcgtttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatgc |
23214713 |
T |
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| Q |
106 |
acaagttgcatttgcaaagccaaacggcgcaaaccttccactaaacaacggcattccacagaacaacaacaataatggaattctaaacaacaacaacctc |
205 |
Q |
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| T |
23214712 |
tcaagttgcatttgcaaagccaaatggtgcaaaccttcctctaaacaacggtgttccacagaacaataacaacaacggaatcctaaacaacaacaacctt |
23214613 |
T |
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| Q |
206 |
cctttcctaacaggactcagtggaaacacagggaatgtgttcaataataacaataataatgggaacaacaatttcccagtgacgaatatga |
296 |
Q |
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||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23214612 |
cctttcctaacaggactcagtgggaacacaggaaacgtgttca---ataacaataataatggg---aacaatttcccagtgacgaatatga |
23214528 |
T |
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