View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_11 (Length: 280)
Name: NF3860_low_11
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 2425378 - 2425122
Alignment:
| Q |
3 |
tgggtagattatactgagaccta-tttgaagctggggagacatgagcaagagattactacttctttgattgccaagaaaaccgatagaagaattggataa |
101 |
Q |
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| T |
2425378 |
tgggtagattatacagagacctactttgaagctggggagacaggagcaagagattactacttctttgattgccaagaaaaccgatagaagaattggataa |
2425279 |
T |
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| Q |
102 |
aagggtcattttgatatataagttcggatcaaattaaatatataattcaacatctctctaaagaacctctcgnnnnnnnnnnnnnnnnnntctttaaaag |
201 |
Q |
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| T |
2425278 |
aagggtcattttgatatataagttcggatcaaattaaatatataattcaacatctctctaaagaacctctcgaaaaaagaaaagaaaaaatctttaa--- |
2425182 |
T |
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| Q |
202 |
aagtgttgcatgtatatgcgtgtgtatgtatatatgaagggagagtaatgctataacaca |
261 |
Q |
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| T |
2425181 |
aagggttgcatgtatatgcgtatgtgtatatatatgaagggagagtaatgctataacaca |
2425122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 2428693 - 2428577
Alignment:
| Q |
3 |
tgggtagattatactgagacctattt-gaagctggggagacatgagcaagagattactacttctttgattgccaagaaaaccgatagaagaattggataa |
101 |
Q |
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| T |
2428693 |
tgggtggattatacaaagacctacttcgaagctagggagacaagagcaaaggattacaacttctttgatggccaataaaaccgataaaagaattggataa |
2428594 |
T |
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| Q |
102 |
a-agggtcattttgata |
117 |
Q |
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| T |
2428593 |
agagagtcattttgata |
2428577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 51358245 - 51358155
Alignment:
| Q |
9 |
gattatactgagaccta-tttgaagctggggagacatgagcaagagattactacttctttgattgccaagaaaaccgatagaagaattgga |
98 |
Q |
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| T |
51358245 |
gattatacagagacctactttaaagcttgggaaacaagagcaagggattactactcctttgatggccaaaaaaaccgatagatgaattgga |
51358155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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