View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_12 (Length: 266)
Name: NF3860_low_12
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 2410014 - 2410271
Alignment:
| Q |
1 |
tcatgctaactaacgtctctgggacactagttcagctaacaataaaagtaaattttgtattgaaaagaacaattttgtatacatctaaaagtttgactac |
100 |
Q |
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| T |
2410014 |
tcatgctaactaacgtctctgagacactagttaagctaacaataaaagtaaattttgtattgaaaagaaca-ttttgtatacatctaaaagtttgactac |
2410112 |
T |
|
| Q |
101 |
acaaattctaaaatatctttattatatttgatttcttaactagtatatcagatatacttcttaattttttccttaattaataaatattgtcaatgtgctt |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2410113 |
acaaattctaaaatatctttattatatcggatttcttaactaatatatcagagatacttgttaattttttccttaattaataaatattgtcaatgtgctt |
2410212 |
T |
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| Q |
201 |
gaagtgtatcc-tttaatggaggtttagcttttctcctttggtgttttctctctctgct |
258 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2410213 |
gaagtgtatccttttaatggaggtttagcttttctcctttggtgttttctctctttgct |
2410271 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 18495111 - 18495165
Alignment:
| Q |
90 |
agtttgactacacaaattctaaaatatctttattatatttgatttcttaactagt |
144 |
Q |
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| T |
18495111 |
agtttgactacacaaattctaagatatttttactatatttgctatcttaactagt |
18495165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 41996654 - 41996701
Alignment:
| Q |
86 |
taaaagtttgactacacaaattctaaaatatctttattatatttgatt |
133 |
Q |
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| T |
41996654 |
taaaaggttgactatacaagttctaaaatatttttattatatttgatt |
41996701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 33648590 - 33648638
Alignment:
| Q |
91 |
gtttgactacacaaattctaaaatatctttattatatttgatttcttaa |
139 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
33648590 |
gtttgactacacaagctctaaaatatttttattatatttgttttcttaa |
33648638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 8206505 - 8206559
Alignment:
| Q |
92 |
tttgactacacaaattctaaaatatctttattatatttgatttcttaactagtat |
146 |
Q |
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||||||| ||||| |||||| |||| ||||||||||||| || |||||||||||| |
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| T |
8206505 |
tttgactgcacaatttctaagatatttttattatatttgtttgcttaactagtat |
8206559 |
T |
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