View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3860_low_14 (Length: 250)

Name: NF3860_low_14
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3860_low_14
NF3860_low_14
[»] chr7 (34 HSPs)
chr7 (11-241)||(2409803-2410034)
chr7 (81-199)||(21809579-21809698)
chr7 (72-199)||(21388287-21388415)
chr7 (72-199)||(35128429-35128558)
chr7 (72-199)||(21800988-21801116)
chr7 (81-199)||(49100725-49100847)
chr7 (72-224)||(10408475-10408628)
chr7 (72-199)||(37673782-37673910)
chr7 (149-229)||(41672435-41672516)
chr7 (72-199)||(48767609-48767738)
chr7 (72-199)||(4089433-4089560)
chr7 (93-199)||(27162835-27162943)
chr7 (81-199)||(10685139-10685257)
chr7 (81-199)||(18121975-18122093)
chr7 (81-179)||(40263765-40263864)
chr7 (81-199)||(48610069-48610187)
chr7 (72-199)||(27213532-27213661)
chr7 (103-179)||(28663831-28663908)
chr7 (72-141)||(31373689-31373758)
chr7 (72-189)||(6376074-6376193)
chr7 (93-179)||(1324774-1324861)
chr7 (72-178)||(19236020-19236127)
chr7 (81-167)||(36116375-36116462)
chr7 (72-193)||(33181340-33181462)
chr7 (72-172)||(2276536-2276637)
chr7 (81-193)||(23876091-23876204)
chr7 (111-199)||(29723545-29723633)
chr7 (75-178)||(42983567-42983671)
chr7 (103-199)||(44648651-44648744)
chr7 (96-138)||(36195453-36195495)
chr7 (72-196)||(48193660-48193786)
chr7 (72-172)||(25750413-25750514)
chr7 (107-179)||(27170091-27170164)
chr7 (77-141)||(43601156-43601220)
[»] chr3 (44 HSPs)
chr3 (72-199)||(30476085-30476213)
chr3 (72-199)||(41727172-41727300)
chr3 (81-229)||(26517119-26517268)
chr3 (81-199)||(31819459-31819578)
chr3 (72-193)||(39617192-39617312)
chr3 (72-191)||(26043063-26043181)
chr3 (81-193)||(50092721-50092835)
chr3 (103-199)||(5504509-5504606)
chr3 (81-172)||(28229218-28229310)
chr3 (72-183)||(48309488-48309600)
chr3 (81-199)||(50363080-50363197)
chr3 (72-196)||(48901453-48901579)
chr3 (83-179)||(51263137-51263234)
chr3 (72-199)||(21932970-21933098)
chr3 (72-199)||(41308710-41308838)
chr3 (72-199)||(42891463-42891590)
chr3 (72-199)||(12077675-12077805)
chr3 (81-194)||(29676679-29676792)
chr3 (81-193)||(46048575-46048689)
chr3 (72-193)||(50524916-50525038)
chr3 (117-229)||(29349467-29349580)
chr3 (96-199)||(20945234-20945338)
chr3 (72-199)||(28477429-28477556)
chr3 (72-179)||(33287910-33288018)
chr3 (72-182)||(40645718-40645829)
chr3 (81-190)||(2421137-2421247)
chr3 (81-229)||(35145284-35145433)
chr3 (96-189)||(48581386-48581480)
chr3 (81-201)||(831292-831413)
chr3 (72-172)||(27638038-27638139)
chr3 (81-193)||(44338134-44338246)
chr3 (72-160)||(48903056-48903145)
chr3 (98-189)||(42010938-42011030)
chr3 (81-179)||(31474477-31474576)
chr3 (149-199)||(31531061-31531112)
chr3 (72-234)||(41739872-41740035)
chr3 (149-191)||(50460969-50461012)
chr3 (81-199)||(11388174-11388295)
chr3 (72-161)||(27047150-27047240)
chr3 (72-199)||(13084294-13084420)
chr3 (81-138)||(29645411-29645468)
chr3 (72-199)||(14645823-14645951)
chr3 (72-199)||(22659624-22659752)
chr3 (72-144)||(26998939-26999011)
[»] chr2 (44 HSPs)
chr2 (72-199)||(44424640-44424766)
chr2 (97-199)||(45214795-45214898)
chr2 (72-193)||(27297622-27297744)
chr2 (93-199)||(15851597-15851705)
chr2 (72-190)||(45150683-45150796)
chr2 (113-199)||(534551-534638)
chr2 (81-199)||(17663678-17663797)
chr2 (72-199)||(1246344-1246473)
chr2 (72-193)||(4758071-4758193)
chr2 (72-199)||(17250892-17251021)
chr2 (75-199)||(28733871-28733996)
chr2 (72-199)||(37355081-37355210)
chr2 (72-179)||(3237768-3237876)
chr2 (81-199)||(28264885-28265002)
chr2 (93-199)||(41665776-41665881)
chr2 (81-199)||(31644375-31644493)
chr2 (81-161)||(13477003-13477084)
chr2 (103-179)||(25731138-25731215)
chr2 (72-172)||(40346040-40346141)
chr2 (98-193)||(2048768-2048864)
chr2 (81-199)||(11071722-11071842)
chr2 (97-199)||(7278545-7278648)
chr2 (81-199)||(20362037-20362155)
chr2 (72-193)||(9718110-9718232)
chr2 (78-199)||(23464734-23464855)
chr2 (81-193)||(2521238-2521351)
chr2 (72-180)||(8065023-8065132)
chr2 (81-172)||(3645377-3645468)
chr2 (81-141)||(26512125-26512185)
chr2 (81-199)||(44101426-44101543)
chr2 (81-199)||(7255655-7255774)
chr2 (103-193)||(41865791-41865882)
chr2 (72-123)||(43650079-43650130)
chr2 (72-199)||(3326769-3326899)
chr2 (99-172)||(6408701-6408775)
chr2 (72-189)||(24774910-24775028)
chr2 (72-176)||(2131802-2131907)
chr2 (72-184)||(11459198-11459311)
chr2 (93-199)||(42250809-42250918)
chr2 (151-199)||(44274450-44274499)
chr2 (72-141)||(44421494-44421563)
chr2 (81-160)||(35178764-35178844)
chr2 (81-224)||(36174988-36175135)
chr2 (81-141)||(43119360-43119420)
[»] chr8 (37 HSPs)
chr8 (72-199)||(57121-57249)
chr8 (72-199)||(26878661-26878789)
chr8 (72-199)||(40337124-40337252)
chr8 (72-193)||(24512105-24512228)
chr8 (72-189)||(25185075-25185193)
chr8 (72-199)||(12762887-12763015)
chr8 (81-199)||(23399712-23399829)
chr8 (72-199)||(45203803-45203931)
chr8 (72-224)||(12998596-12998754)
chr8 (72-199)||(1177088-1177217)
chr8 (72-199)||(10396163-10396291)
chr8 (72-199)||(25198334-25198462)
chr8 (72-179)||(37956166-37956273)
chr8 (72-199)||(38202925-38203053)
chr8 (103-199)||(31252588-31252685)
chr8 (72-193)||(2562667-2562791)
chr8 (81-179)||(23280705-23280804)
chr8 (81-199)||(24962298-24962417)
chr8 (72-193)||(36309534-36309657)
chr8 (72-199)||(38761289-38761419)
chr8 (72-190)||(40517785-40517904)
chr8 (84-193)||(38773287-38773397)
chr8 (84-199)||(36437558-36437675)
chr8 (72-179)||(7772557-7772665)
chr8 (81-199)||(34157971-34158089)
chr8 (81-199)||(43980516-43980635)
chr8 (77-201)||(31498962-31499086)
chr8 (72-199)||(5191482-5191610)
chr8 (72-199)||(38770120-38770248)
chr8 (72-193)||(1769388-1769508)
chr8 (93-178)||(2031282-2031368)
chr8 (72-179)||(31746358-31746466)
chr8 (81-185)||(43191424-43191529)
chr8 (72-199)||(885506-885633)
chr8 (72-179)||(14577606-14577713)
chr8 (72-171)||(25888640-25888740)
chr8 (96-199)||(41087043-41087146)
[»] chr1 (43 HSPs)
chr1 (72-199)||(5085020-5085148)
chr1 (72-199)||(8984593-8984720)
chr1 (96-199)||(36085038-36085142)
chr1 (72-199)||(48721800-48721927)
chr1 (72-199)||(33231884-33232012)
chr1 (72-199)||(8877816-8877944)
chr1 (72-179)||(13145462-13145570)
chr1 (72-199)||(32152202-32152329)
chr1 (81-199)||(15512712-15512831)
chr1 (81-199)||(28948895-28949014)
chr1 (72-172)||(9675625-9675726)
chr1 (103-199)||(10160787-10160883)
chr1 (72-199)||(3831091-3831219)
chr1 (81-172)||(29140612-29140704)
chr1 (81-199)||(32144364-32144484)
chr1 (99-194)||(46732896-46732992)
chr1 (72-193)||(3143447-3143570)
chr1 (72-199)||(35365913-35366043)
chr1 (78-193)||(15179460-15179577)
chr1 (93-193)||(44652798-44652899)
chr1 (93-199)||(28334151-28334259)
chr1 (81-199)||(47643593-47643712)
chr1 (81-187)||(44395588-44395695)
chr1 (106-222)||(299010-299128)
chr1 (72-146)||(31305362-31305436)
chr1 (149-199)||(47753968-47754018)
chr1 (72-141)||(16582577-16582646)
chr1 (81-199)||(20564828-20564949)
chr1 (83-199)||(51390469-51390585)
chr1 (107-190)||(3072216-3072299)
chr1 (72-199)||(4081970-4082098)
chr1 (96-199)||(34012555-34012658)
chr1 (72-128)||(46495353-46495409)
chr1 (72-178)||(291587-291694)
chr1 (81-190)||(30898503-30898613)
chr1 (81-170)||(47070921-47071011)
chr1 (81-189)||(10842380-10842489)
chr1 (113-192)||(13698916-13698996)
chr1 (81-141)||(13723468-13723528)
chr1 (72-193)||(32047486-32047606)
chr1 (72-199)||(34696814-34696942)
chr1 (72-136)||(38680519-38680583)
chr1 (103-198)||(52141107-52141203)
[»] chr5 (32 HSPs)
chr5 (81-195)||(4857428-4857544)
chr5 (72-199)||(25017605-25017733)
chr5 (72-199)||(29866234-29866362)
chr5 (81-179)||(16496490-16496589)
chr5 (81-199)||(35568936-35569055)
chr5 (81-178)||(40979164-40979262)
chr5 (72-199)||(3558958-3559086)
chr5 (81-199)||(39690417-39690536)
chr5 (76-193)||(38972064-38972182)
chr5 (72-172)||(3247232-3247333)
chr5 (81-199)||(4745181-4745302)
chr5 (72-199)||(4738675-4738802)
chr5 (103-193)||(18729668-18729760)
chr5 (72-229)||(15898363-15898522)
chr5 (99-199)||(16969446-16969547)
chr5 (72-199)||(36177337-36177466)
chr5 (72-179)||(21574832-21574939)
chr5 (81-199)||(27642556-27642675)
chr5 (72-179)||(42644429-42644537)
chr5 (81-199)||(16046-16165)
chr5 (81-179)||(5151152-5151250)
chr5 (81-199)||(12895140-12895259)
chr5 (81-193)||(9946294-9946408)
chr5 (149-199)||(15967014-15967064)
chr5 (81-139)||(19089013-19089071)
chr5 (93-193)||(5845242-5845343)
chr5 (81-193)||(21912174-21912287)
chr5 (81-172)||(556055-556147)
chr5 (103-234)||(7736056-7736188)
chr5 (72-136)||(10934051-10934115)
chr5 (151-199)||(25690617-25690665)
chr5 (72-179)||(30348029-30348136)
[»] chr4 (47 HSPs)
chr4 (81-199)||(25477279-25477398)
chr4 (75-199)||(52226067-52226193)
chr4 (72-199)||(39237521-39237649)
chr4 (72-199)||(40411275-40411403)
chr4 (72-199)||(20262328-20262454)
chr4 (72-191)||(54438555-54438676)
chr4 (75-193)||(44812545-44812664)
chr4 (72-193)||(31840141-31840262)
chr4 (72-229)||(33246400-33246557)
chr4 (81-193)||(30153162-30153273)
chr4 (72-199)||(22651509-22651637)
chr4 (72-199)||(34643440-34643567)
chr4 (81-199)||(12624750-12624869)
chr4 (81-199)||(41945705-41945824)
chr4 (93-179)||(56217005-56217092)
chr4 (72-193)||(46729350-46729472)
chr4 (99-199)||(21171796-21171896)
chr4 (152-229)||(21473712-21473788)
chr4 (81-193)||(22750780-22750893)
chr4 (81-199)||(29584948-29585066)
chr4 (72-196)||(48472431-48472555)
chr4 (103-179)||(51787847-51787924)
chr4 (72-179)||(20185608-20185716)
chr4 (81-199)||(20291394-20291512)
chr4 (93-190)||(32107911-32108010)
chr4 (72-193)||(43509126-43509249)
chr4 (81-179)||(52552463-52552562)
chr4 (72-199)||(20116495-20116624)
chr4 (72-193)||(31294201-31294323)
chr4 (116-192)||(31552257-31552334)
chr4 (103-179)||(31917453-31917529)
chr4 (72-184)||(41919985-41920098)
chr4 (149-222)||(48609429-48609502)
chr4 (103-199)||(54359759-54359855)
chr4 (108-199)||(24072848-24072940)
chr4 (72-144)||(52768887-52768959)
chr4 (81-136)||(41459641-41459696)
chr4 (81-199)||(52198660-52198779)
chr4 (72-193)||(56373283-56373404)
chr4 (72-141)||(5448707-5448776)
chr4 (81-199)||(14602583-14602706)
chr4 (72-199)||(20016568-20016694)
chr4 (72-141)||(31937383-31937452)
chr4 (103-199)||(51918589-51918685)
chr4 (82-196)||(19654483-19654599)
chr4 (81-141)||(26203184-26203244)
chr4 (75-123)||(31552188-31552236)
[»] scaffold1091 (1 HSPs)
scaffold1091 (72-199)||(1845-1973)
[»] chr6 (20 HSPs)
chr6 (72-199)||(16327168-16327297)
chr6 (72-199)||(16350566-16350695)
chr6 (72-229)||(34513122-34513279)
chr6 (81-179)||(11302909-11303008)
chr6 (81-199)||(19838985-19839104)
chr6 (72-193)||(1763858-1763980)
chr6 (72-199)||(31945845-31945973)
chr6 (75-167)||(31152953-31153046)
chr6 (72-199)||(6791421-6791549)
chr6 (72-199)||(15981839-15981967)
chr6 (72-199)||(30465901-30466029)
chr6 (96-234)||(33607424-33607561)
chr6 (81-199)||(5895785-5895904)
chr6 (72-183)||(197400-197512)
chr6 (75-193)||(22410781-22410901)
chr6 (72-199)||(16186618-16186743)
chr6 (155-199)||(5084484-5084529)
chr6 (81-193)||(9461347-9461460)
chr6 (72-141)||(12514577-12514646)
chr6 (149-193)||(3887881-3887925)
[»] scaffold0013 (2 HSPs)
scaffold0013 (72-193)||(61220-61342)
scaffold0013 (72-179)||(49181-49290)
[»] scaffold0012 (1 HSPs)
scaffold0012 (72-170)||(99778-99877)
[»] scaffold0005 (1 HSPs)
scaffold0005 (81-199)||(214672-214795)
[»] scaffold0699 (1 HSPs)
scaffold0699 (77-141)||(7627-7691)
[»] scaffold0182 (1 HSPs)
scaffold0182 (93-141)||(22126-22174)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 2410034 - 2409803
Alignment:
Q  11 cagagacgttagttagcatgaccaataaattactccctctgttactatatataagtccccgttgtatgtaaatattactaagttgtcctttatttgtatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  2410034 cagagacgttagttagcatgaccaataaattactccctctgttcctatatataagtctccgttgtatgtgaatattactaagttgtcctttatttgtatg 2409935  T
Q  111 tatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagtagtctgtataa 209  Q
    |||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  2409934 tatattaaatttgtcttttcatatttcaagaaaaattaatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagtattatgtataa 2409835  T
Q  210 gagcttatatttaggaacaatttttatcttct 241  Q
    ||||||||||||| | ||||||||||||||||    
T  2409834 gagcttatatttaaggacaatttttatcttct 2409803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 21809698 - 21809579
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| |||| ||||||| || | || | | ||||||||||||| |||||||||||||||||    
T  21809698 aatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagttagtagtattaattaggggtatgtttaagaaaaa 21809599  T
Q  180 taaaataaatgcatttagta 199  Q
    |||||||||||||| |||||    
T  21809598 taaaataaatgcatctagta 21809579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 21388287 - 21388415
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| ||||||||||| |||| || ||||||||| ||  || ||||||||||||  ||||||||    
T  21388287 ttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcaaattttaagataagttagtagtattaattaatggtatgtt 21388386  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  21388387 taggaaaaaaataataaatgcatctagta 21388415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 35128429 - 35128558
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||||||| ||||||||| |||||||||||  ||| ||||||| |||| || || |||||||||||||| ||||||||    
T  35128429 ttgtgtgttaatattatgaaattgtcctttgtttgtatgtgtattaaatttgaattttcatatttcaagacaagatgatagtattaattaggggtatgtt 35128528  T
Q  171 taagaaaaataa-aataaatgcatttagta 199  Q
    ||||||||| || ||||||||||| |||||    
T  35128529 taagaaaaaaaataataaatgcatctagta 35128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 21801116 - 21800988
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||| ||||||||||||| ||||||||||| ||||  |||||| || | ||| ||||||||||||||||  |||||||    
T  21801116 ttgtgtgttaatattactaaattgtcatttatttgtatgtgtattaaatttgactttttatatttcaaaataaattaatagtattaattaggagtatgtt 21801017  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||  | | ||||||||| |||||    
T  21801016 taagaaaataatattaaatgcatctagta 21800988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 49100725 - 49100847
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga-gaaataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| ||||  |||||||| |||||||||| |||||||||| ||||||    
T  49100725 aatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagataaaataataatattaattaggggtatgtttaggaaaaa 49100824  T
Q  180 ---taaaataaatgcatttagta 199  Q
        ||||||||||||| |||||    
T  49100825 aataaaaataaatgcatatagta 49100847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 10408628 - 10408475
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| ||| ||||||| ||||||||| ||||||||| |||||||||||  ||| ||||||| ||   || | | ||||||||||||| ||||||||    
T  10408628 ttgtgtgtgaattttactaatttgtcctttgtttgtatgtgtattaaatttgatttttcatatttcaatgcaagttagtagtattaattaggggtatgtt 10408529  T
Q  171 taagaaaaataaaataaatgcatttagtagtctgtataagagcttatatttagg 224  Q
    || |||||||| ||||||||||  || || | |||||| | |||||||||||||    
T  10408528 tatgaaaaatataataaatgcacctactaatttgtataggggcttatatttagg 10408475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 37673782 - 37673910
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| || |||||| |||||||||| || |||||    
T  37673782 ttgtgtgttaatattatgaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagataataatattaattaggggcatgtt 37673881  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| | ||||||| ||| |||||    
T  37673882 taagaaaaaaataataaatacatctagta 37673910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 41672516 - 41672435
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataa-aataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
    ||||||||||||| |||||||||| |||||| || ||||||||||| ||||| | |||||||| ||||||||||||| ||||    
T  41672516 tagtattaattaggggtatgtttaggaaaaaaaataataaatgcatctagtaatttgtataagggcttatatttagggacaa 41672435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 48767609 - 48767738
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttattt-gtatgtatattaaatttgtctttccatattttaagaga-aataatagtattaattagaggtatgt 169  Q
    |||| ||| |||||||| || ||||||||| ||| |||||| ||||||||||| |||| ||||||| |||| |   || ||||||||||||| |||||||    
T  48767609 ttgtgtgttaatattacgaaattgtcctttgttttgtatgtgtattaaatttgacttttcatatttcaagacatgttattagtattaattaggggtatgt 48767708  T
Q  170 ttaagaaaaataaaataaatgcatttagta 199  Q
    ||| ||||||  |||||||||||| |||||    
T  48767709 ttaggaaaaaataaataaatgcatctagta 48767738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 4089560 - 4089433
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || || ||| ||||||| | ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| ||||||||    
T  4089560 ttgtgtgttaatattacgaaattatcttttgtttgtatatgtattaaatttgacttttcatatttcaagacaagatagtagtattaattaggggtatgtt 4089461  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  4089460 taggaaaaa-ataataaatgcatctagta 4089433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 27162943 - 27162835
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttc-catattttaagagaaat-aatagtattaattagaggtatgtttaagaaaaataaaataaatg 190  Q
    ||||| ||| ||||||||| ||||||||||  ||||  ||||||| |||| || | |||||||||||||||| ||||||||| |||||| | ||||||||    
T  27162943 ttgtcatttgtttgtatgtgtattaaatttaactttttcatatttcaagacaagttaatagtattaattagaagtatgtttaggaaaaaaataataaatg 27162844  T
Q  191 catttagta 199  Q
    |||||||||    
T  27162843 catttagta 27162835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 10685139 - 10685257
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga-gaaataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| ||||  ||||| || |||||||||  |||| |||| |||||||    
T  10685139 aatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaaaatagtaatattaattatgggtacgttt-agaaaaa 10685237  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  10685238 aataataaatgcatctagta 10685257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 18122093 - 18121975
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || |||||| |||| |||| ||| ||||||| |||| ||||||| |||| ||  || |||||||||||||| ||||||||| ||||||    
T  18122093 aatattactaaattttcctttgtttgaatgtgtataaaatttgacttttcatatttcaagataagttagtagtattaattagacgtatgtttaggaaaaa 18121994  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  18121993 -ataataaatgcatctagta 18121975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 40263765 - 40263864
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| | |||||||| ||||||    
T  40263765 aatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagataagatagtagtattaattagggctatgtttatgaaaaa 40263864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 48610187 - 48610069
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| | ||||||||||| | ||||||| |||||||    
T  48610187 aatattacgaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtggtattaattagggatatgttt-agaaaaa 48610089  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  48610088 aataataaatgcatctagta 48610069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 27213532 - 27213661
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| ||||||| ||| | || ||||||| |||| ||  |||||||||| |||||  ||||  |    
T  27213532 ttgtgtgttaatattactaaattgtcctttgtttgtatgtctattaaaattgacatttcatatttcaagacaagttaatagtatttattaggagtattct 27213631  T
Q  171 taagaaaaataa-aataaatgcatttagta 199  Q
    ||||||||| || ||||||||||| |||||    
T  27213632 taagaaaaaaaataataaatgcatctagta 27213661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 28663831 - 28663908
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||||||||||||| |||  ||||||| |||| ||| || ||||||||||||| |||||||||| ||||||    
T  28663831 tttgtatgtatattaaatttgacttctcatatttcaagataaattagtagtattaattaggggtatgtttaggaaaaa 28663908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 31373758 - 31373689
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| ||||||||||| |||| ||||||| ||||    
T  31373758 ttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaga 31373689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 6376193 - 6376074
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa--ataatagtattaattagaggtatgt 169  Q
    |||| ||| ||||||||||| ||||| ||| ||||||||| ||||||||||  |||| || ||||||||| ||   ||||| ||||||||||  ||||||    
T  6376193 ttgtgtgttaatattactaaattgtcatttgtttgtatgtgtattaaatttaacttttcaaattttaagacaagtttaatattattaattaggagtatgt 6376094  T
Q  170 ttaagaaaaataaaataaat 189  Q
    ||| |||||| | |||||||    
T  6376093 ttaggaaaaaaataataaat 6376074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 1324774 - 1324861
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| |||||||||| ||||||    
T  1324774 ttgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaaa 1324861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 19236127 - 19236020
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| |  |||| |||| ||||||||| |||||||||||  ||| ||||||| |||| ||  || ||||||||||||| ||||||||    
T  19236127 ttgtatgttaatattaccatattgttctttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagttagtagtattaattaggggtatgtt 19236028  T
Q  171 taagaaaa 178  Q
    || |||||    
T  19236027 taggaaaa 19236020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 36116375 - 36116462
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtat 167  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| ||||  |||||| |||| || |||||| ||||||||||||||||    
T  36116375 aatattacgaaattgtcatttgtttgtatgtgtattaaatttgactttttatatttcaagacaagataataatattaattagaggtat 36116462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 33181340 - 33181462
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||||| | |||||||| || ||||| ||| ||||||||| ||||||||||  |||| |||| ||||||| || | | || ||||||||||  |||||||    
T  33181340 ttgtatattaatattaccaaattgtcatttgtttgtatgtgtattaaatttaacttttcatactttaagacaagttagtaatattaattaggagtatgtt 33181439  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    |||||||||   |||||||||||    
T  33181440 taagaaaaaattaataaatgcat 33181462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 2276637 - 2276536
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| || |||| |||| ||  || ||||||||||||  ||||||||    
T  2276637 ttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcaaatttcaagataagttactagtattaattaagggtatgtt 2276538  T
Q  171 ta 172  Q
    ||    
T  2276537 ta 2276536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 23876091 - 23876204
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||| ||| ||||||||| ||||||||||  |||| | ||||| |||| ||| || ||  ||||||||| |||||||||| |||||     
T  23876091 aatattactaaattgtcttttgtttgtatgtgtattaaatttaacttttcgtatttcaagacaaattagtatgattaattagtggtatgtttaggaaaat 23876190  T
Q  180 taaaataaatgcat 193  Q
     | |||||||||||    
T  23876191 aataataaatgcat 23876204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 29723545 - 29723633
Alignment:
Q  111 tatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||||||| |||| ||||||| || | || ||| |||||||||||||| |||| ||||||||||| | ||||||||||| |||||    
T  29723545 tatattaaatttgacttttcatatttcaacacaagatagtagtattaattagaagtatatttaagaaaaa-ataataaatgcatctagta 29723633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 42983671 - 42983567
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaa 173  Q
    ||||| ||||||| ||| ||||| | | ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||  ||||||||||     
T  42983671 tatgttaatattattaaattgtcttatgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaatggtatgtttag 42983572  T
Q  174 gaaaa 178  Q
    |||||    
T  42983571 gaaaa 42983567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 44648744 - 44648651
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaaataatagtattaattagaggtatgtttaagaaaaataa-aataaatgcatttagta 199  Q
    ||||||||| |||||||||||  ||| ||||||| |||| ||    |||||||| |||  |||| ||||||||||||||| |||||||||||||||||    
T  44648744 tttgtatgtgtattaaatttgatttttcatatttcaagacaa----tagtattagttaagggtacgtttaagaaaaataataataaatgcatttagta 44648651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 36195453 - 36195495
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatatttta 138  Q
    ||||||||||| |||||||||||||||| |||| |||||||||    
T  36195453 tcctttatttgaatgtatattaaatttgacttttcatatttta 36195495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 48193660 - 48193786
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagagg-tatgt 169  Q
    |||| ||| |||||||| || || |||||| ||| |||   ||||||||||| |||| ||||||| |||| |||| | | ||||||||||| || |||||    
T  48193660 ttgtgtgttaatattaccaaattatcctttgtttatattagtattaaatttgacttttcatatttcaagacaaattagttgtattaattagggggtatgt 48193759  T
Q  170 ttaagaaaaataaaataaatgcattta 196  Q
    ||| |||||| | ||||||||||||||    
T  48193760 ttaggaaaaaaataataaatgcattta 48193786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 25750413 - 25750514
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| |||||||||||  ||| ||||||| |||| ||  || || |||||||||| ||||||||    
T  25750413 ttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgatttttcatatttcaagacaaggtagtaatattaattaggggtatgtt 25750512  T
Q  171 ta 172  Q
    ||    
T  25750513 ta 25750514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 27170091 - 27170164
Alignment:
Q  107 tatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||| ||||||||||| |||| ||||||| |||| ||| |||||||||||||||   ||||||||| ||||||    
T  27170091 tatgtctattaaatttgacttttcatatttcaagacaaattaatagtattaattatgagtatgtttatgaaaaa 27170164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 43601220 - 43601156
Alignment:
Q  77 tgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    ||||| |||||| || ||||||||| ||| ||||| ||||||||||| |||| ||||||| ||||    
T  43601220 tgtaagtattacaaaattgtcctttgtttatatgtgtattaaatttgacttttcatatttcaaga 43601156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 30476085 - 30476213
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| ||||||| ||| ||||||||||||| ||||||||    
T  30476085 ttgtgtgttaatattacgaaattgtcctttgtttgtatgtctattaaatttgacttttcatatttcaagagaagatagtagtattaattaggggtatgtt 30476184  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  30476185 taggaaaaaaataataaatgcatctagta 30476213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 41727300 - 41727172
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||||||||||||| ||||||||||| |||| ||||||| |||| || ||| |  |||||||||| ||||||||    
T  41727300 ttgtgtgttaatattacaaaattgtcctttatttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtgatattaattaggggtatgtt 41727201  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| | |||||||||||||||||    
T  41727200 taagaaaaaaataataaatgcatttagta 41727172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 26517268 - 26517119
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||||||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| |||||||||| | ||||    
T  26517268 aatattaccaaattgtcctttatttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggcaaaa 26517169  T
Q  180 taaaataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
     | ||||||||||| ||||| | |||| ||||| ||| ||||||| ||||    
T  26517168 aataataaatgcatctagtaatttgtaaaagagtttacatttagggacaa 26517119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 31819459 - 31819578
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| |||||||||| ||||||    
T  31819459 aatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaatatagtagtattaattaggggtatgtttaggaaaaa 31819558  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  31819559 aataataaatgcatctagta 31819578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 39617312 - 39617192
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataatagtattaattagaggtatgttt 171  Q
    |||||||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| ||||  || | ||||||||||||| | ||| |||    
T  39617312 ttgtatgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaga-caagagtagtattaattagggatatattt 39617214  T
Q  172 aagaaaaataaaataaatgcat 193  Q
    |||||||| | |||||||||||    
T  39617213 aagaaaaaaataataaatgcat 39617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 26043063 - 26043181
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataatagtattaattagaggtatgttt 171  Q
    |||| ||| ||| |||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || || ||||||||||||| |||||||||    
T  26043063 ttgtgtgttaatgttaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagataattagtagtattaattag-ggtatgttt 26043161  T
Q  172 aagaaaaataaaataaatgc 191  Q
    | |||||| | |||||||||    
T  26043162 aggaaaaaaataataaatgc 26043181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 50092721 - 50092835
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||||||||||||| ||||||| |||||||| ||||||| |||| || || ||| |||||||||  ||||||||| | |||||    
T  50092721 aatattacaaaattgtcctttatttgtatgtgtattaaaattgtcttttcatatttcaagacaagatgataatattaattaagggtatgttttaaaaaaa 50092820  T
Q  180 taa-aataaatgcat 193  Q
    ||| |||||||||||    
T  50092821 taataataaatgcat 50092835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 5504606 - 5504509
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| |||||||||| |||||| | ||||||||||| |||||    
T  5504606 tttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatatagta 5504509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 28229218 - 28229310
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgttta 172  Q
    |||||||| || ||||||||||||||||||||||||||||||| ||||  ||||||||||| ||  || ||||||||||||  ||||||||||    
T  28229218 aatattaccaaattgtcctttatttgtatgtatattaaatttgacttttaatattttaagacaagttagtagtattaattatgggtatgttta 28229310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 48309488 - 48309600
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || || |||||| ||||||||| | ||||||||| |||| ||||||| |||| || | | ||||||||||||| ||||||||    
T  48309488 ttgtatgttaatattacaaaattatcctttgtttgtatgtgtgttaaatttgacttttcatatttcaagataagttagtagtattaattaggggtatgtt 48309587  T
Q  171 taagaaaaataaa 183  Q
    || ||||||||||    
T  48309588 taggaaaaataaa 48309600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 50363080 - 50363197
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| |||||||||| ||||||    
T  50363080 aatattaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaggggtatgtttaggaaaaa 50363179  T
Q  180 taaaataaatgcatttagta 199  Q
    |  |||||||| ||||||||    
T  50363180 t--aataaatgtatttagta 50363197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 48901579 - 48901453
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||| ||| ||||||| ||||||||||||| ||||  ||||||||||| ||| |||||||||||||||  |||| |||    
T  48901579 ttgtgtgttaatattactaaattgtcatttgtttgtatatatattaaatttgacttttaatattttaagaaaaattaatagtattaattaagggtaggtt 48901480  T
Q  171 ta-agaaaaataaaataaatgcattta 196  Q
    ||  ||| || | ||||||||||||||    
T  48901479 tagggaataaaataataaatgcattta 48901453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 51263137 - 51263234
Alignment:
Q  83 tattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||| ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || |||||||||||| | |||||||||| |||||    
T  51263137 tattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttaaagataagttagtagtattaattaaaagtatgtttaaaaaaaa 51263234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 21932970 - 21933098
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| | ||||||||| |||| ||||||| |||| || | ||  ||||||||||| ||||||||    
T  21932970 ttgtgtgttaatattaccaaattatcctttgtttgtatgtgtgttaaatttgacttttcatatttcaagataagttaaccgtattaattaggggtatgtt 21933069  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  21933070 taggaaaaaaataataaatgcatctagta 21933098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 41308838 - 41308710
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || | |||| ||| ||||| ||||||||||| |||| ||||||| |||| || | | ||||||||||||| ||||||||    
T  41308838 ttgtgtgttaatattaccaatttattctttgtttatatgtgtattaaatttggcttttcatatttcaagacaagttagtagtattaattaggggtatgtt 41308739  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  41308738 taggaaaaaaataataaatgcatctagta 41308710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 42891463 - 42891590
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| ||  |||||||| ||||||||||||||||||||| |||| || |||| |||| ||  || | ||||||||||| ||||||||    
T  42891463 ttgtgtgttaatattaccaaactgtcctttgtttgtatgtatattaaatttgacttttcaaatttaaagacaagttagtggtattaattaggggtatgtt 42891562  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  42891563 taggaaaaa-ataataaatgcatctagta 42891590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 12077805 - 12077675
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| || | || |||  |||||||||||| ||||||||    
T  12077805 ttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagatagaagtattaattaggggtatgtt 12077706  T
Q  171 taagaaaaataa--aataaatgcatttagta 199  Q
    || |||||| ||  ||||||||||| |||||    
T  12077705 taggaaaaaaaattaataaatgcatctagta 12077675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 29676792 - 29676679
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||||||||||||| ||||||||||| | || ||||||| |||| || ||| | ||||||||||| |||||||||| | ||||    
T  29676792 aatattacgaaattgtcttttatttgtatgtgtattaaatttggcatttcatatttcaagacaagatagtggtattaattaggggtatgtttagggaaaa 29676693  T
Q  180 taaaataaatgcatt 194  Q
     | ||||||||||||    
T  29676692 -ataataaatgcatt 29676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 46048575 - 46048689
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaatta-gaggtatgtttaagaaaa 178  Q
    |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| |||| ||||||| | ||||||||||  ||||    
T  46048575 aatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtgttaattagggggtatgtttagaaaaa 46048674  T
Q  179 ataaaataaatgcat 193  Q
    | | |||||||||||    
T  46048675 aaataataaatgcat 46048689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 50525038 - 50524916
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| ||||  | |||| |||| ||  || |||| |||||||| ||||||||    
T  50525038 ttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttgaaatttcaagacaagttagtagttttaattaggggtatgtt 50524939  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    || |||||| | |||||||||||    
T  50524938 taggaaaaaaataataaatgcat 50524916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 29349467 - 29349580
Alignment:
Q  117 aaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagtagtctgtataagagctt 215  Q
    ||||||| |||| ||||||| |||| || | | ||||||||||||||||||||||||||||||| | ||| ||||||| ||||| | || | | ||| ||    
T  29349467 aaatttgacttttcatatttcaagataagttagtagtattaattagaggtatgtttaagaaaaaaataattaatgcatctagtaatttgaaaatgagttt 29349566  T
Q  216 atatttaggaacaa 229  Q
    | ||||||||||||    
T  29349567 acatttaggaacaa 29349580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 20945338 - 20945234
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatt 194  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||||| ||  || ||||||||||||| | |||||||| |||||  | || ||||||||     
T  20945338 tcctttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttagtagtattaattagggttatgtttaggaaaataataacaaatgcatc 20945239  T
Q  195 tagta 199  Q
    |||||    
T  20945238 tagta 20945234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 28477429 - 28477556
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| |||||||||  |||||||||| || | ||||||| |||| |||| | ||||||||||||| ||||| ||    
T  28477429 ttgtgtgttaatattaccaaattgtcttttgtttgtatgtgcattaaatttgactattcatatttcaagacaaattagtagtattaattaggggtatatt 28477528  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    | ||||||| | ||||||||||| |||||    
T  28477529 ttagaaaaa-ataataaatgcatctagta 28477556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 33287910 - 33288018
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||| ||| ||||||||| ||||| ||| ||||||||||| ||||  |||||| |||| ||  || |||||||||||||| |||||||    
T  33287910 ttgtgtgttaatattattaaattgtcctttgtttgtttgtgtattaaatttgactttttatatttcaagacaagttagtagtattaattagatgtatgtt 33288009  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  33288010 taggaaaaa 33288018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 40645718 - 40645829
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||| |||  ||| ||||||| |||| || | || |||||||||||| ||||||||    
T  40645718 ttgtgtgttaatattaccaaattgtcttttgtttgtatgtgtattaaacttggtttttcatatttcaagacaagttattagtattaattaggggtatgtt 40645817  T
Q  171 taagaaaaataa 182  Q
    || |||||||||    
T  40645818 taggaaaaataa 40645829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 2421137 - 2421247
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||||||||||||||| ||||  |||||  |||| ||  || |||||||| ||||||||||||||| |||| |    
T  2421137 aatattacaaaattgtcatttgtttgtatgtatattaaatttgactttttatattcaaagacaagttagtagtattagttagaggtatgtttaggaaata 2421236  T
Q  180 taaaataaatg 190  Q
     | ||||||||    
T  2421237 aataataaatg 2421247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 35145284 - 35145433
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga-gaaataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||| ||||||| | ||||||||||| |||| ||||||| ||||  ||||  || |||||||||| | |||||||| ||||||    
T  35145284 aatattacgaaattatcctttgtttgtatttgtattaaatttgacttttcatatttcaagacaaaatggtaatattaattagggatatgtttaggaaaaa 35145383  T
Q  180 taa-aataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
     || ||||||||||| ||||| | || | ||||| ||||||||||| ||||    
T  35145384 aaataataaatgcatctagtaatttg-aaaagagtttatatttagggacaa 35145433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 48581386 - 48581480
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgtttaagaaaaataaaataaat 189  Q
    |||||||||| ||||| |||||||||||  ||| |||||||  ||| || | ||||||| |||||||||||||||||| |||||| | |||||||    
T  48581386 tcctttatttttatgtgtattaaatttgatttttcatatttccagacaagttaatagtactaattagaggtatgtttaggaaaaaaataataaat 48581480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 831413 - 831292
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| ||| ||||| |||||||||||  ||| ||||||| || | || | || ||||||||||||  ||||||||| |||||     
T  831413 aatattaccaaattgtcctttgtttatatgtgtattaaatttgatttttcatatttcaatataagttattagtattaattaggagtatgtttaggaaaat 831314  T
Q  180 taaaataaatgcatttagtagt 201  Q
     | ||||||||||| |||||||    
T  831313 aataataaatgcatctagtagt 831292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 27638139 - 27638038
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||||||| ||||||||| ||||||||||| | || ||||||| |||| || ||| | ||||||||||| ||||||||    
T  27638139 ttgtgtgttaatattataaaattgtcctttgtttgtatgtgtattaaatttgacatttcatatttcaagacaagatagtggtattaattaggggtatgtt 27638040  T
Q  171 ta 172  Q
    ||    
T  27638039 ta 27638038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 44338134 - 44338246
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| ||| ||||| ||||||||||| ||||  |||||| |||| ||  || || |||||||||| ||||||||| || ||||    
T  44338134 aatattaccaaattgtcctttgtttctatgtgtattaaatttgactttttatatttcaagataagttagtactattaattaggggtatgttt-aggaaaa 44338232  T
Q  180 taaaataaatgcat 193  Q
    ||| ||||||||||    
T  44338233 taatataaatgcat 44338246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 48903145 - 48903056
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaatta 160  Q
    |||| ||| ||||||||||| ||||| ||| ||||||| ||||||||||||| ||||  |||||| |||| ||| || ||||||||||||    
T  48903145 ttgtgtgttaatattactaaattgtcatttgtttgtatatatattaaatttgacttttaatatttcaagaaaaattagtagtattaatta 48903056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 42010938 - 42011030
Alignment:
Q  98 ctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaataaaataaat 189  Q
    |||| ||||||||||| ||||||||| |||| ||||||| |||| ||| ||  |||||||||||  |||||||||| |||||| | |||||||    
T  42010938 ctttgtttgtatgtatgttaaatttgacttttcatatttcaagataaattagcagtattaattatgggtatgtttaggaaaaaaataataaat 42011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 31474477 - 31474576
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||| ||| || || ||| ||||||||| ||||||||||   ||| || ||||||||| |||| | ||||||||||||| |||||||||| ||||||    
T  31474477 aatattattaaattatcatttgtttgtatgtgtattaaatttagtttttcaaattttaagacaaattagtagtattaattaggggtatgtttaggaaaaa 31474576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 31531112 - 31531061
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataa-aataaatgcatttagta 199  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||    
T  31531112 tagtattaattaggggtatgtttaggaaaaataataataaatgcatctagta 31531061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 41740035 - 41739872
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| | |||||||||  ||| ||||||| |||| || | |  |||||||||||  ||||||||    
T  41740035 ttgtgtgttaatattaccaaattatcctttgtttgtatgtgtgttaaatttgaattttcatatttcaagataagttagcagtattaattaagggtatgtt 41739936  T
Q  171 taagaaaaataaaataaatgcatttagtagtctgtataagagcttatatttaggaacaattttt 234  Q
    || |||||| | |||||||| |  ||||| | || | | ||| ||||||||||| |||||||||    
T  41739935 taggaaaaaaataataaatgtacctagtaatttgaaaatgagtttatatttagggacaattttt 41739872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 50461012 - 50460969
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataa-aataaatgc 191  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  50461012 tagtattaattagaggtatgttaaagaaaaataataataaatgc 50460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 11388174 - 11388295
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatag--tattaattagaggtatgtttaagaaa 177  Q
    |||||||| || ||||  ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || |||  |||||||||| ||||||||||  |||    
T  11388174 aatattaccaaattgtattttgtttgtatgtgtattaaatttgacttttcatatttcaagataagttagtagtatattaattaggggtatgtttagaaaa 11388273  T
Q  178 aataaaataaatgcatttagta 199  Q
    || | ||||||||||| |||||    
T  11388274 aaaataataaatgcatctagta 11388295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 27047240 - 27047150
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattag 161  Q
    |||| ||| |||||||| || ||||| ||| |||||||||  |||||||||| ||||  ||||||||||| ||  ||||||||||||||||    
T  27047240 ttgtgtgttaatattaccaaattgtcttttgtttgtatgtgcattaaatttgactttttatattttaagacaatttaatagtattaattag 27047150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 13084420 - 13084294
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || || ||| ||||||||| ||||||||||| |||| || ||||||| | ||  || ||| ||||||||| | ||||||    
T  13084420 ttgtgtgttaatattaccaaattatcttttgtttgtatgtgtattaaatttgacttttcaaattttaacacaagttagtagcattaattagggatatgtt 13084321  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||||  ||||||||||| |||||    
T  13084320 taggaaaaat--aataaatgcatctagta 13084294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 29645411 - 29645468
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatatttta 138  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| |||| |||||||||    
T  29645411 aatattacgaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttta 29645468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 14645951 - 14645823
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||  ||| ||||||||| |||||||||||  ||| || |||| |||| || | | ||||||||| ||| ||||||||    
T  14645951 ttgtgtgttaatattaccaaattgttatttgtttgtatgtgtattaaatttgatttttcaaatttcaagacaagttagtagtattaactaggggtatgtt 14645852  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||  ||||| | ||||||||||| |||||    
T  14645851 tagaaaaaaaataataaatgcatatagta 14645823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 22659624 - 22659752
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || || ||| ||||||||| ||||||||||  |||| ||||||| || | |||| | ||||||||||||  | ||||||    
T  22659624 ttgtgtgttaatattaccaaattatcttttgtttgtatgtgtattaaatttaacttttcatatttcaaaacaaattagtagtattaattaaggatatgtt 22659723  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||  | ||||||||||| |||||    
T  22659724 tatgaaaataataataaatgcatctagta 22659752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 26998939 - 26999011
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa 144  Q
    |||| ||| |||||||| || ||||| ||| |||||| || |||||||||||  ||| |||||||||||||||    
T  26998939 ttgtttgttaatattacgaaattgtcttttgtttgtacgtgtattaaatttgatttttcatattttaagagaa 26999011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 44424640 - 44424766
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| ||||||||    
T  44424640 ttgtatgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattaggggtatgtt 44424739  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||  ||||||||||||| |||||    
T  44424740 taggaaaa--aaaataaatgcatctagta 44424766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 45214795 - 45214898
Alignment:
Q  97 cctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgcattt 195  Q
    ||||| ||||||||| ||||||||||  |||| |||||||||||| |||| | ||||||||||||| ||||||||||||||||| | |||||||| || |    
T  45214795 cctttgtttgtatgtgtattaaatttaacttttcatattttaagataaattagtagtattaattaggggtatgtttaagaaaaaaataataaatgtatct 45214894  T
Q  196 agta 199  Q
    ||||    
T  45214895 agta 45214898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 27297622 - 27297744
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| | ||||||    
T  27297622 ttgtgtgttaatattacaaaattatcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattagggatatgtt 27297721  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    || |||||| | |||||||||||    
T  27297722 taggaaaaaaataataaatgcat 27297744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 15851597 - 15851705
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaataa-aataaatg 190  Q
    ||||||||| ||| ||||| |||||||||||  ||| ||||||| |||| ||| || ||||||||||||| |||||||||| ||||||||| ||||||||    
T  15851597 ttgtcctttgtttatatgtgtattaaatttgaattttcatatttcaagacaaaatagtagtattaattaggggtatgtttaggaaaaataataataaatg 15851696  T
Q  191 catttagta 199  Q
    ||| |||||    
T  15851697 catctagta 15851705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 45150796 - 45150683
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataatagtattaattagaggtatgttt 171  Q
    |||| ||| ||||||||| | ||||||||| ||||||||| ||||||||||| |||| ||||||||||  |      |||||||||||| ||||||||||    
T  45150796 ttgtgtgttaatattactcaattgtcctttgtttgtatgtgtattaaatttgacttttcatattttaaagg------tagtattaattaaaggtatgttt 45150703  T
Q  172 aagaaaaataa-aataaatg 190  Q
    ||||||||||| ||||||||    
T  45150702 aagaaaaataataataaatg 45150683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 534551 - 534638
Alignment:
Q  113 tattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||||| |||| ||||||| |||| || ||||||||||||||||| ||||| |||| |||||| ||||||||||||| |||||    
T  534551 tattaaatttgacttttcatatttcaagacaagataatagtattaattaggggtatatttaggaaaaaaaaaataaatgcatctagta 534638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 17663678 - 17663797
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  17663678 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 17663777  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  17663778 aataataaatgcatctagta 17663797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 1246473 - 1246344
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttc-catattttaagagaa-ataatagtattaattagaggtatgt 169  Q
    |||| ||| |||||||  || |||| |||| ||||||||| ||||||||||| ||||  ||||||| |||| || ||||||||||||||||| |||||||    
T  1246473 ttgtgtgttaatattatgaaattgttctttgtttgtatgtgtattaaatttgactttttcatatttcaagacaagataatagtattaattaggggtatgt 1246374  T
Q  170 ttaagaaaaataa-aataaatgcatttagta 199  Q
    || |||||||||| |||||||| ||||||||    
T  1246373 tt-agaaaaataataataaatgtatttagta 1246344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 4758071 - 4758193
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||||||| ||| ||||| ||||||||||| |||| |||||||||||| ||| || |||||||||||||   ||||||    
T  4758071 ttgtgtgttaatattatgaaattgtcctttgtttttatgtgtattaaatttgactttacatattttaagaaaaattagtagtattaattaggaatatgtt 4758170  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    || |||||| | |||||||||||    
T  4758171 taggaaaaaaataataaatgcat 4758193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 17251021 - 17250892
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| |||| || ||| |||| ||||||| |||| || ||| |||||||||||| |||||||||    
T  17251021 ttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtatttaaattgacttttcatatttcaagacaagatagtagtattaattaaaggtatgtt 17250922  T
Q  171 taagaaaaataa-aataaatgcatttagta 199  Q
    || |||||| || ||||||||||| |||||    
T  17250921 taggaaaaaaaataataaatgcatatagta 17250892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 28733871 - 28733996
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaa 173  Q
    ||||| |||||||| || ||||| ||| ||||||||| ||| ||||||| ||||  |||||| |||| |||| | ||||||||||||| ||||||||||     
T  28733871 tatgttaatattaccaaattgtcatttgtttgtatgtgtataaaatttgactttttatatttcaagataaattagtagtattaattaggggtatgtttag 28733970  T
Q  174 gaaaaataaaataaatgcatttagta 199  Q
    |||||  | ||||||||||| |||||    
T  28733971 gaaaacaataataaatgcatatagta 28733996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 37355081 - 37355210
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| || |||| |||||||||||  ||||||||    
T  37355081 ttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagataaaagtattaattaagggtatgtt 37355180  T
Q  171 taagaaaa-ataaaataaatgcatttagta 199  Q
    || ||||| | | ||||||||||| |||||    
T  37355181 taggaaaataaataataaatgcatctagta 37355210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 3237768 - 3237876
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| | ||||||    
T  3237768 ttgtgtgttaatattacaaaattatcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattagggatatgtt 3237867  T
Q  171 taagaaaaa 179  Q
    ||| |||||    
T  3237868 taaaaaaaa 3237876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 28265002 - 28264885
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataatagtattaattagaggtatgtttaagaaaaat 180  Q
    |||||||| || ||||| ||| ||||||||||||||||||||| || | ||||||| |||| || |  || |||||||||| |||||||||| |||||||    
T  28265002 aatattaccaaattgtcatttgtttgtatgtatattaaatttgactattcatatttcaagacaagt--taatattaattaggggtatgtttaggaaaaat 28264905  T
Q  181 a-aaataaatgcatttagta 199  Q
    |  ||||||||||| |||||    
T  28264904 attaataaatgcatctagta 28264885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 41665776 - 41665881
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgtttaagaaaaataaaataaatgc 191  Q
    ||||||||| ||||||||| ||||||||||  |||| ||||||| |||| || | ||||||||||||||| |||||||||| |||||  |||||||| ||    
T  41665776 ttgtcctttgtttgtatgtgtattaaatttaacttttcatatttcaagacaagttaatagtattaattaggggtatgtttaggaaaa--aaaataaaagc 41665873  T
Q  192 atttagta 199  Q
    || |||||    
T  41665874 atctagta 41665881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 31644493 - 31644375
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| |||||||||||  ||| |||| || |||| ||| || ||||||||||||| |||||||||| ||||||    
T  31644493 aatattacaaaattgtcatttgtttgtatgtgtattaaatttgatttttcataattcaagataaaatagtagtattaattaggggtatgtttaggaaaaa 31644394  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  31644393 -ataataaatgcatctagta 31644375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 13477084 - 13477003
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattag 161  Q
    ||||||||||  |||||||||||||||||| ||||||||||||  ||| |||||||||| | ||| || |||||||||||||    
T  13477084 aatattactagattgtcctttatttgtatgcatattaaatttgatttttcatattttaaaataaattagtagtattaattag 13477003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 25731215 - 25731138
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||||||||||||||||  ||| |||||||||||| ||  || ||||||||||||| |||||||||| ||||||    
T  25731215 tttgtatgtatattaaatttgatttttcatattttaagacaagttagtagtattaattaggggtatgtttaggaaaaa 25731138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 40346141 - 40346040
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||| ||||||||||||| ||||||||||| |||| ||||||| |||  ||  |  ||||||||||||| ||||||||    
T  40346141 ttgtgtgttaatattactaaattgtcttttatttgtatgtgtattaaatttgacttttcatatttcaaggcaagtttgtagtattaattaggggtatgtt 40346042  T
Q  171 ta 172  Q
    ||    
T  40346041 ta 40346040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 2048864 - 2048768
Alignment:
Q  98 ctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgcat 193  Q
    |||| ||||||||| ||||||||||| ||||  |||||| |||| || | | ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2048864 ctttgtttgtatgtgtattaaatttgactttttatatttcaagacaagttagtagtatttattaggggtatgtttaagaaaaaaataataaatgcat 2048768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 11071722 - 11071842
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataatagtattaattagaggtatgtttaag-aaaaa 179  Q
    ||||||||||| |||||||||  |||||||| ||||||||||| |||| ||||||| || | |  || || |||||||||| || ||||||| | |||||    
T  11071722 aatattactaaattgtcctttgcttgtatgtgtattaaatttgacttttcatatttcaaaacagttagtaatattaattaggggcatgtttaggaaaaaa 11071821  T
Q  180 taa-aataaatgcatttagta 199  Q
    ||| ||||||||||| |||||    
T  11071822 taataataaatgcatctagta 11071842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 7278648 - 7278545
Alignment:
Q  97 cctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgcattt 195  Q
    ||||| ||||||||| ||||||||||| || |  |||||| |||| || | | ||||||||||||| ||||||||||||||||  | ||||||||||| |    
T  7278648 cctttgtttgtatgtgtattaaatttgactattaatatttcaagataagttagtagtattaattaggggtatgtttaagaaaataataataaatgcatct 7278549  T
Q  196 agta 199  Q
    ||||    
T  7278548 agta 7278545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 20362037 - 20362155
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| || |||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  20362037 aatattactaaattgtcctttgtttgtatgtgta-taaatttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 20362135  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  20362136 aataataaatgcatctagta 20362155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 9718232 - 9718110
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || | |||| ||||||||| |||||||||||||||  | ||||| |||| || | | ||||||||||||  ||||||||    
T  9718232 ttgtgtgttaatattaccaaattattctttgtttgtatgtgtattaaatttgtcttatcgtatttcaagacaagttagtagtattaattaagggtatgtt 9718133  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    || |||||| | |||||||||||    
T  9718132 taggaaaaaaataataaatgcat 9718110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 23464734 - 23464855
Alignment:
Q  78 gtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaa 176  Q
    ||||||||||  || ||||||||||||||||| | ||||||||||| |||| ||||||| || | ||  || ||||||||||||| ||||| ||  ||||    
T  23464734 gtaaatattatcaaattgtcctttatttgtatatgtattaaatttgacttttcatatttcaaaacaagttagtagtattaattaggggtat-ttgtagaa 23464832  T
Q  177 aaataaaataaatgcatttagta 199  Q
    |||  |||||||||||| |||||    
T  23464833 aaaataaataaatgcatctagta 23464855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 2521351 - 2521238
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||| ||| ||||| ||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  2521351 aatattattaaattgtcttttgtttgtatgtgtattaaatttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 2521252  T
Q  180 taaaataaatgcat 193  Q
     | |||||||||||    
T  2521251 aataataaatgcat 2521238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 8065132 - 8065023
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| |||||| ||||  ||| ||||||| |||| || | | ||||||||||||| ||||||||    
T  8065132 ttgtgtgttaatattaccaaattatcctttgtttgtatgtgtattaactttgatttttcatatttcaagacaagttagtagtattaattaggggtatgtt 8065033  T
Q  171 taagaaaaat 180  Q
    || |||||||    
T  8065032 taggaaaaat 8065023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 3645377 - 3645468
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgttta 172  Q
    ||||||||||| ||||||||  ||||| ||||||||||||||| |||| ||||||| |||  ||  || ||||||||||||| ||||||||||    
T  3645377 aatattactaaattgtccttcgtttgtgtgtatattaaatttgacttttcatatttcaaggcaagttagtagtattaattag-ggtatgttta 3645468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 26512125 - 26512185
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||  |||||| ||||    
T  26512125 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttatatttcaaga 26512185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 44101426 - 44101543
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || | |||||||| ||||| |||||||||||  |||  ||||||| ||| || ||| |||||||||||||   |||||||||| ||||    
T  44101426 aatattactaaattattctttatttatatgtgtattaaatttgattttttatattttgagacaagtaagtagtattaattaggtatatgtttaagtaaaa 44101525  T
Q  180 taaaataaatgcatttagta 199  Q
    |  ||||||||||| |||||    
T  44101526 t--aataaatgcatctagta 44101543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 7255655 - 7255774
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || ||||||  |||| ||| ||||||||||| |||| ||||||| |||| ||| || ||||||||||||| | |||||||| |||||     
T  7255655 aatattaccaaattatcctttgattgtttgtgtattaaatttgacttttcatatttcaagacaaattagtagtattaattagggatatgtttaggaaaat 7255754  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||| ||| |||||    
T  7255755 aataataaatacatctagta 7255774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 41865791 - 41865882
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcat 193  Q
    ||||||||| ||||||||||| ||||  ||||||||||| ||  || || |||| ||||| |||||||||| |||||| | |||||||||||    
T  41865791 tttgtatgtgtattaaatttgactttttatattttaagacaagttagtaatatttattaggggtatgtttaggaaaaaaataataaatgcat 41865882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 43650079 - 43650130
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttg 123  Q
    |||||||| ||||||||||| |||| |||| ||||||||| |||||||||||    
T  43650079 ttgtatgttaatattactaaattgttctttgtttgtatgtgtattaaatttg 43650130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 3326769 - 3326899
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||||| | ||||||| ||| ||||||||| ||| ||||| ||| ||||||  |||| ||||||| |||| ||  || ||||||||||||| ||||||||    
T  3326769 ttgtatattaatattattaaattgtcctttgtttatatgtgtataaaatttaacttttcatatttcaagataacgtagtagtattaattaggggtatgtt 3326868  T
Q  171 ta-agaaaaataa-aataaatgcatttagta 199  Q
    || | |||||||| ||||||| ||| |||||    
T  3326869 tagaaaaaaataataataaatacatctagta 3326899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 6408701 - 6408775
Alignment:
Q  99 tttatttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgttta 172  Q
    ||||||||||||| |||||||||   |||| ||||||| |||| || | |||||||||||||| |||||||||||    
T  6408701 tttatttgtatgtgtattaaattcaacttttcatatttcaagaaaagttaatagtattaattaaaggtatgttta 6408775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 24774910 - 24775028
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||| ||||  | ||||||||    
T  24774910 ttgtgtgttaatattaccaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtactaatcgggggtatgtt 24775009  T
Q  171 taagaaaaataaaataaat 189  Q
    || |||||| | |||||||    
T  24775010 taggaaaaaaataataaat 24775028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 2131802 - 2131907
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || || ||| ||||||| | ||||||||||| |||| ||||||| |||| ||  || | ||||||||||| ||||||||    
T  2131802 ttgtgtgttaatattaccaaattatcttttgtttgtatctgtattaaatttgacttttcatatttaaagacaagttagttgtattaattaggggtatgtt 2131901  T
Q  171 taagaa 176  Q
    ||||||    
T  2131902 taagaa 2131907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 11459198 - 11459311
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||||||| ||||||| | |||||||||||  ||| || |||| |||| ||  || ||||||||||||   |||||||    
T  11459198 ttgtgtgttaatattactaaattgtcctttgtttgtatatgtattaaatttgatttttcaaatttcaagacaagttagtagtattaattaagagtatgtt 11459297  T
Q  171 taagaaaaataaaa 184  Q
    || |||||| ||||    
T  11459298 taggaaaaaaaaaa 11459311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 42250918 - 42250809
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgttta-agaaaaataa-aataaat 189  Q
    ||||| ||||||| ||||| ||||||||||| ||||  |||||| |||| ||  |||||||||||||||||  |||||||| | |||||||| |||||||    
T  42250918 ttgtcatttatttatatgtgtattaaatttgactttttatatttcaagacaagttaatagtattaattagaaatatgtttagaaaaaaataataataaat 42250819  T
Q  190 gcatttagta 199  Q
    | || |||||    
T  42250818 gtatctagta 42250809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 44274499 - 44274450
Alignment:
Q  151 gtattaattagaggtatgtttaa-gaaaaataaaataaatgcatttagta 199  Q
    ||||||||||| ||||||||||| |||||| | |||||||||||||||||    
T  44274499 gtattaattaggggtatgtttaaggaaaaaaataataaatgcatttagta 44274450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 44421494 - 44421563
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||| ||| ||||||||||| ||||| ||| ||||||||| |||||||||||| |||  | |||||||||    
T  44421494 ttgtttgttaatattactaaattgtcatttgtttgtatgtgtattaaatttgtttttttaaattttaaga 44421563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 35178844 - 35178764
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaatta 160  Q
    |||||||| || ||||| ||||||||||| | ||||||||||| |||| ||||||| |||  || ||| ||||||||||||    
T  35178844 aatattacgaaattgtcttttatttgtatttgtattaaatttgacttttcatatttcaaggcaagatagtagtattaatta 35178764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 36175135 - 36174988
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataatag-tattaattagaggtatgttt--aagaaa 177  Q
    ||||| |||||||||| |||| |||||||  |||||||||||  ||||  ||||||||||| |||| |  | ||||||||||||| ||||||  || ||     
T  36175135 aatatcactaagttgttctttgtttgtatacatattaaatttaactttttatattttaagataaattagcgttattaattagaggcatgttttgaaaaat 36175036  T
Q  178 aataa-aataaatgcatttagtagtctgtataagagcttatatttagg 224  Q
    ||||| |||||||| || ||||| | |||| | ||||||||| |||||    
T  36175035 aataataataaatgaatctagtaatttgtacatgagcttatagttagg 36174988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 43119420 - 43119360
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||  ||| ||||||| ||||    
T  43119420 aatattactaaattgtcatttgtttgtatgtgtattaaatttgatttttcatatttcaaga 43119360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 57249 - 57121
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || |||| |||||||||||||| ||||||||||| |||| ||||||| |||| || ||||||||||||||||  ||||||||    
T  57249 ttgtgtgttaatattacgaaattgttctttatttgtatgtgtattaaatttgacttttcatatttcaagacaagataatagtattaattaagggtatgtt 57150  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  57149 taggaaaaaaataataaatgcatctagta 57121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 26878789 - 26878661
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||||||||||||||| |||| ||||||| |||| ||  || ||||||||||||| ||||||||    
T  26878789 ttgtgtgttaatattaccaaattgtcctttgtttgtatgtatattaaatttgactttacatatttcaagataagttagtagtattaattaggggtatgtt 26878690  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||| ||| |||||    
T  26878689 taggaaaaaaataataaatacatctagta 26878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 40337252 - 40337124
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||||||| ||||||||| |||| || ||| |||| ||||||| |||| || ||||||||||||||||  ||||||||    
T  40337252 ttgtatgttaatattacaaaattgtcctttgtttgtatgtgtatttaaattgacttttcatatttcaagacaagataatagtattaattaagggtatgtt 40337153  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  40337152 taggaaaaaaataataaatgcatatagta 40337124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 24512228 - 24512105
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||| || ||||||||||||| ||||||||    
T  24512228 ttgtgtgttaatattatcaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatttcaagataaaatagtagtattaattaggggtatgtt 24512129  T
Q  171 taagaaaaataa-aataaatgcat 193  Q
    |||||||||||| |||||||||||    
T  24512128 taagaaaaataataataaatgcat 24512105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 25185075 - 25185193
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| |||||||||||||||| ||||||| |||| || ||| ||||||||||||| ||||||||    
T  25185075 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaaatttgtcttttcatatttcaagataagatagtagtattaattaggggtatgtt 25185174  T
Q  171 taagaaaaataaaataaat 189  Q
    || |||||| || ||||||    
T  25185175 taggaaaaaaaagataaat 25185193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 12762887 - 12763015
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || || |||||||||| ||||| ||    
T  12762887 ttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtaatattaattaggggtatctt 12762986  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  12762987 taggaaaaaaataataaatgcatctagta 12763015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 23399829 - 23399712
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| |||| ||||||| ||   ||  || ||||||||||||||||||||||||||||||     
T  23399829 aatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaaccaagttagtagtattaattagaggtatgtttaagaaaa- 23399731  T
Q  180 taaaataaatgcatttagta 199  Q
     |||||||| | ||||||||    
T  23399730 -aaaataaaagtatttagta 23399712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 45203803 - 45203931
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||||||| ||||||||  ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| ||||||||    
T  45203803 ttgtatgttaatattaccaacttgtcctttgtttgtatgcgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaggggtatgtt 45203902  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||  | ||||||||||| |||||    
T  45203903 taggaaaataataataaatgcatctagta 45203931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 12998754 - 12998596
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa------taatagtattaattagaggt 165  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| ||||||||||| | || ||||||| |||| ||       || ||||||||||||| |||    
T  12998754 ttgtgtgtgaatattactaaattgtcctttgtttgtatgtgtattaaatttgacctttcatatttcaagacaagacaagttagtagtattaattaggggt 12998655  T
Q  166 atgtttaagaaaaataaaataaatgcatttagtagtctgtataagagcttatatttagg 224  Q
    ||||||| |||||| | ||| |||||||  |||| | |||||||| |||||||||||||    
T  12998654 atgtttaggaaaaaaataattaatgcatcgagtaatttgtataagggcttatatttagg 12998596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 1177217 - 1177088
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||| | |||||||| || ||||| ||||||||||||| |||||||||||  ||| ||||||| || | || ||| ||||||||||||| ||||||||    
T  1177217 ttgtatattaatattacgaaattgtcttttatttgtatgtgtattaaatttgatttttcatatttcaaaacaagatagtagtattaattaggggtatgtt 1177118  T
Q  171 taagaaaaataa-aataaatgcatttagta 199  Q
    || |||||| || ||||||||||| |||||    
T  1177117 taggaaaaaaaataataaatgcatctagta 1177088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 10396291 - 10396163
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| | ||||| |||| || |||||| |||||||||| | ||||||    
T  10396291 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaaatttgacttttcgtatttcaagacaagataataatattaattagggatatgtt 10396192  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || ||||||  |||||||||||| |||||    
T  10396191 taggaaaaaataaataaatgcatctagta 10396163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 25198334 - 25198462
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||| ||||||| |||| ||||||| |||| || | | ||||||||||||| ||||||||    
T  25198334 ttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtataaaatttgacttttcatatttcaagataagttagtagtattaattaggggtatgtt 25198433  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||  | ||||||||||| |||||    
T  25198434 taggaaaataataataaatgcatctagta 25198462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 37956166 - 37956273
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||||||||| ||||| |||| ||||||| |||| || |||||| |||||||||| ||||||||    
T  37956166 ttgtgtgttaatattacgaatttgtcctttgtttgtatgtatattagatttgacttttcatatttcaagacaagataataatattaattag-ggtatgtt 37956264  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  37956265 tacgaaaaa 37956273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 38203053 - 38202925
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| |||||||||||  ||| ||||||| |||| || ||  ||||||||||||| ||||| ||    
T  38203053 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagatggtagtattaattaggggtatatt 38202954  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| | ||||||||||| |||||    
T  38202953 taagaaaaaaataataaatgcatctagta 38202925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 31252685 - 31252588
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    |||| |||| ||||||||||| |||| |||||||||||| || ||| |||||| |||||| ||||||||||||||||  | ||||||||||| |||||    
T  31252685 tttgcatgtgtattaaatttgacttttcatattttaagacaagatagtagtataaattaggggtatgtttaagaaaataataataaatgcatctagta 31252588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 2562791 - 2562667
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatatt-ttaagagaa-ataatagtattaattagaggtatgt 169  Q
    |||||||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||  ||||| || ||| ||||||||||||| | ||| |    
T  2562791 ttgtatgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatattactaagacaagatagtagtattaattagggatatat 2562692  T
Q  170 ttaagaaaaataa-aataaatgcat 193  Q
    ||| |||||| || |||||||||||    
T  2562691 ttatgaaaaaaaataataaatgcat 2562667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 23280705 - 23280804
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||  ||| ||||||  |||  ||  || |||||||||||||||||| ||||||||||||    
T  23280705 aatattactaaattgtcctttgtttgtatgtttattaaatttgatttttcatattacaagccaagttagtagtattaattagaggtacgtttaagaaaaa 23280804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 24962417 - 24962298
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||  ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  24962417 aatattactaaattgtcctttgtttgtatgtgtattaaatttaactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 24962318  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  24962317 aataataaatgcatctagta 24962298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 36309657 - 36309534
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||| |||| |||||||||||| ||  || || |||||||||| | ||||||    
T  36309657 ttgtgtgttaatattatcaaattgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttagtattattaattagggttatgtt 36309558  T
Q  171 taagaaaaataa-aataaatgcat 193  Q
    || ||||||||| |||||||||||    
T  36309557 taggaaaaataataataaatgcat 36309534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 38761419 - 38761289
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| | ||||||    
T  38761419 ttgtgtgttaatattatgaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattagggatatgtt 38761320  T
Q  171 t--aagaaaaataaaataaatgcatttagta 199  Q
    |  |||||||| | ||||||||||| |||||    
T  38761319 tagaagaaaaaaataataaatgcatctagta 38761289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 40517785 - 40517904
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| ||||  | |||| |||| ||  || ||||||||||||| ||||||||    
T  40517785 ttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtattaaatttgactttttaaatttcaagacaagttagtagtattaattaggggtatgtt 40517884  T
Q  171 taagaaaaataaaataaatg 190  Q
    || |||||| | ||||||||    
T  40517885 taggaaaaaaataataaatg 40517904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 38773397 - 38773287
Alignment:
Q  84 attactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataa 182  Q
    ||||| || ||||| ||| ||||||||| ||| |||||||  ||| ||||||| |||| || ||  |||||||||||||||||||||||| |||||| |     
T  38773397 attacgaaattgtcttttgtttgtatgtgtatgaaatttgatttttcatatttcaagacaagatggtagtattaattagaggtatgtttaggaaaaaaat 38773298  T
Q  183 aataaatgcat 193  Q
    |||||||||||    
T  38773297 aataaatgcat 38773287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 36437558 - 36437675
Alignment:
Q  84 attactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaag-aaaaata 181  Q
    ||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || |||||||| |||| |||||||||| | ||||| |    
T  36437558 attaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattagttaggggtatgtttaggcaaaaaaa 36437657  T
Q  182 aaataaatgcatttagta 199  Q
     ||||||||||| |||||    
T  36437658 taataaatgcatctagta 36437675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 7772557 - 7772665
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||||||||||||| ||||||||||  |||| ||||||| |||| || ||| |  |||||||||| | ||||||    
T  7772557 ttgtgtgttaatattacgaaattgtcctttatttgtatgtgtattaaatttcacttttcatatttcaagataagatattgatattaattagggatatgtt 7772656  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  7772657 taggaaaaa 7772665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 34157971 - 34158089
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||| ||| ||||||||| ||||||||||| ||||   |||||||||| ||| || ||| ||||||||  |||||||||| |||||     
T  34157971 aatattactaaattgtcatttgtttgtatgtgtattaaatttggctttttgtattttaagacaaattagtaggattaatta-tggtatgtttaggaaaat 34158069  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  34158070 aataataaatgcatatagta 34158089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 43980635 - 43980516
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || || ||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  43980635 aatattactaaattatcatttgtttgtatgtgtattaaatttgactttttgtatttcaagataaattagtaggattaattaggggtatgtttaggaaaat 43980536  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  43980535 aataataaatgcatctagta 43980516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 31498962 - 31499086
Alignment:
Q  77 tgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaaga 175  Q
    ||||||| ||| ||| ||||| ||| |||||||||  ||| || |||  |||  ||||||||||| |||| | |||||||||||||||||||||||| ||    
T  31498962 tgtaaattttattaaattgtcatttgtttgtatgtgcatttaaattgatttttaatattttaagataaattagtagtattaattagaggtatgtttatga 31499061  T
Q  176 aaaataaaataaatgcatttagtagt 201  Q
    |||| |||| |||||||  |||||||    
T  31499062 aaaa-aaaaaaaatgcaactagtagt 31499086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 5191610 - 5191482
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || |||||| || ||| ||||| |||||||||||  ||| ||||||| |||| || | |  |||| ||||||| ||||||||    
T  5191610 ttgtgtgttaatattaccaaattgtccattgtttatatgtgtattaaatttgatttttcatatttcaagacaatttagcagtactaattaggggtatgtt 5191511  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| | | ||||||||| |||||    
T  5191510 taagaaaaaaatattaaatgcatctagta 5191482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 38770248 - 38770120
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| |||||| |||| |||| ||||||| |||| || |  |||||||||||||| | ||| ||    
T  38770248 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaattttgacttttcatatttcaagacaagaggatagtattaattagggatatatt 38770149  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | |||||||  ||||||||    
T  38770148 taggaaaaaaataataaatatatttagta 38770120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 1769508 - 1769388
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| |  ||||| ||| |||||||||  |||||||||| ||||  |||||| |||| || | | ||||||||||||  ||||||||    
T  1769508 ttgtatgttaatattaccacattgtcatttgtttgtatgtg-attaaatttgactttttatatttcaagacaagttagtagtattaattaagggtatgtt 1769410  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    ||||||||| | |||||||||||    
T  1769409 taagaaaaa-ataataaatgcat 1769388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 2031282 - 2031368
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaa 178  Q
    ||||||||| || |||| | |||||||||    ||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  2031282 ttgtcctttgttcgtatatgtattaaattatatttttcatatttcaagataaattagtagtattaattagaggtatgtttaagaaaa 2031368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 31746466 - 31746358
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa--taatagtattaattagaggtatgt 169  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| || || ||  || || |||||||||| |||||||    
T  31746466 ttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaa-agcaagttagtattattaattaggggtatgt 31746368  T
Q  170 ttaagaaaaa 179  Q
    ||| ||||||    
T  31746367 ttaggaaaaa 31746358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 43191529 - 43191424
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||| ||| ||||||||| ||||||||||   ||| ||||||| |||| ||  || ||| ||||||||| |||||||||| || |||    
T  43191529 aatattactaaattgtcatttgtttgtatgtgtattaaatttaaattttcatatttcaagataagttagtaggattaattaggggtatgtttaggagaaa 43191430  T
Q  180 taaaat 185  Q
     |||||    
T  43191429 aaaaat 43191424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 885506 - 885633
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||||||| ||||||||| ||||||||||| |||| || |||| |||| ||| || | |||||||||| |||||| ||    
T  885506 ttgtgtgttaatattatcaaattgtcctttgtttgtatgtgtattaaatttgacttttcaaatttcaagacaaattagtggtattaatta-aggtatatt 885604  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || | |||| | ||||||| ||| |||||    
T  885605 tatggaaaaaataataaattcatctagta 885633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 14577713 - 14577606
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || |||| |||| ||||||||| |||||||||||  ||| ||||||| |||| ||  || ||||||||||||| | |||| |    
T  14577713 ttgtttgttaatattaccaaattgtactttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagttagtagtattaattagggatatg-t 14577615  T
Q  171 taagaaaaa 179  Q
    |||||||||    
T  14577614 taagaaaaa 14577606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 25888640 - 25888740
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||  |  ||||| ||| ||||||||| |||||||||||  ||| |||||||||||| ||| || || ||||||||||  |||||||    
T  25888640 ttgtatgttaatattatcatattgtcatttgtttgtatgtgtattaaatttgatttttcatattttaagacaaattagtactattaattaggagtatgtt 25888739  T
Q  171 t 171  Q
    |    
T  25888740 t 25888740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 41087043 - 41087146
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatt 194  Q
    |||||| ||||||||| |||||||||||  ||| ||||||| |||| ||  || ||||||||||||  ||||| |||| |||||| | |||||||||||     
T  41087043 tcctttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagttagtagtattaattaagggtat-tttaggaaaaaaataataaatgcata 41087141  T
Q  195 tagta 199  Q
    |||||    
T  41087142 tagta 41087146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 5085148 - 5085020
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| ||||||| ||| ||||||||||||| ||||||||    
T  5085148 ttgtgtgttaatattacgaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatttcaagagaagatagtagtattaattaggggtatgtt 5085049  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  5085048 taggaaaaaaataataaatgcatctagta 5085020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 8984720 - 8984593
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||| || ||||||||||||| |||| |||    
T  8984720 ttgtgtgttaatattactaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagataaattagtagtattaattag-ggtaagtt 8984622  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||||||||||||||||| |||||    
T  8984621 taggaaaaataaaataaatgcatctagta 8984593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 36085038 - 36085142
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatt 194  Q
    |||||||||||||||| ||||||||||  |||| |||||||  ||| || ||||||||||||||||| ||||||||||||||||| | |||||||||||     
T  36085038 tcctttatttgtatgtgtattaaatttaacttttcatatttcgagacaagataatagtattaattaggggtatgtttaagaaaaaaataataaatgcatc 36085137  T
Q  195 tagta 199  Q
    |||||    
T  36085138 tagta 36085142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 48721927 - 48721800
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| ||||||||    
T  48721927 ttgtgtgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattaggggtatgtt 48721828  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  48721827 taggaaaaa-ataataaatgcatctagta 48721800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 33231884 - 33232012
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| |||||||| || |||| ||||||| |||| || ||| | ||||||||||| ||||||||    
T  33231884 ttgtgtgttaatattacgaaattgtcctttgtttgtatgtgtattaaatctgacttttcatatttcaagacaagatagtggtattaattaggggtatgtt 33231983  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  33231984 taggaaaaaaataataaatgcatctagta 33232012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 8877816 - 8877944
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| ||||  |||||| |||| || ||| ||||||||||||| ||||||||    
T  8877816 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaaatttgactttttatatttcaagataagatagtagtattaattaggggtatgtt 8877915  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||  ||||| | ||||||||||| |||||    
T  8877916 tattaaaaaaataataaatgcatctagta 8877944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 13145462 - 13145570
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||||||| |||||||||  |||||||||| |||| |||||||||||| ||  || || |||||||||| ||||||||    
T  13145462 ttgtatgttaatattaccaaattgtcctttgtttgtatgtgcattaaatttgacttttcatattttaagataagttagtaatattaattaggggtatgtt 13145561  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  13145562 taggaaaaa 13145570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 32152202 - 32152329
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||  ||| ||||||||| ||||||||||| |||| |||||||||||| ||  || ||||||||||||| ||||||||    
T  32152202 ttgtgtgttaatattaccaaattgttatttgtttgtatgtgtattaaatttgacttttcatattttaagataagttagtagtattaattaggggtatgtt 32152301  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  32152302 taggaaaaa-ataataaatgcatatagta 32152329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 15512831 - 15512712
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  15512831 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 15512732  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  15512731 aataataaatgcatctagta 15512712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 28949014 - 28948895
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  28949014 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 28948915  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  28948914 aataataaatgcatctagta 28948895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 9675726 - 9675625
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||||||||||||| ||||||||||| || | ||||||| || | || |||||| |||||||||| ||||||||    
T  9675726 ttgtgtgttaatattacgaaattgtcctttatttgtatgtgtattaaatttgactattcatatttcaaaataagataataatattaattaggggtatgtt 9675627  T
Q  171 ta 172  Q
    ||    
T  9675626 ta 9675625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 10160787 - 10160883
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| ||||||||||| |||| ||||||| |||| || ||||||||||||||||| |||||||||| |||||| | |||||| |||| |||||    
T  10160787 tttgtatgtgtattaaatttgacttttcatatttcaagataatataatagtattaattag-ggtatgtttaggaaaaaaataataaacgcatctagta 10160883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 3831091 - 3831219
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||||| ||||||||| |||| ||||||| |||| || |||  |||||||||||| | ||||||    
T  3831091 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtatgttaaatttgacttttcatatttcaagacaagatagaagtattaattagggatatgtt 3831190  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || ||||||   ||||||||||| |||||    
T  3831191 taggaaaaaattaataaatgcatctagta 3831219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 29140704 - 29140612
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgttta 172  Q
    |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| | ||||||||||| ||||||||||    
T  29140704 aatattacaaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtggtattaattaggggtatgttta 29140612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 32144364 - 32144484
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||| ||||||| |||| |||||||||||| ||  ||||| |||||||||| | |||||||| ||||||    
T  32144364 aatattaccaaattgtcatttgtttgtatgtgtataaaatttgacttttcatattttaagacaagttaataatattaattagggatatgtttaggaaaaa 32144463  T
Q  180 taa-aataaatgcatttagta 199  Q
     || ||||||||||| |||||    
T  32144464 aaataataaatgcatatagta 32144484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 46732992 - 46732896
Alignment:
Q  99 tttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaataaaataaatgcatt 194  Q
    ||||||||||||| ||||||||||| |||| ||||||| |||| ||| || ||||| ||||||| |||||||||| | |||| | ||||||||||||    
T  46732992 tttatttgtatgtgtattaaatttgacttttcatatttcaagacaaattagtagtaataattaggggtatgtttagggaaaaaataataaatgcatt 46732896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 3143447 - 3143570
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||| ||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| ||||||||    
T  3143447 ttgtgtgttaatattacaaaattgtcttttgtttttatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattaggggtatgtt 3143546  T
Q  171 taagaaaaataa-aataaatgcat 193  Q
    |   |||||||| |||||||||||    
T  3143547 tggaaaaaataataataaatgcat 3143570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 35366043 - 35365913
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||| |||| |||||||||||| ||  ||| ||||||||||| |||||||||    
T  35366043 ttgtgtgttaatattatcaaattgtcttttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttaacagtattaattaaaggtatgtt 35365944  T
Q  171 ta-agaaaaataa-aataaatgcatttagta 199  Q
    || | || ||||| ||||||||||| |||||    
T  35365943 tagaaaataataataataaatgcatctagta 35365913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 15179460 - 15179577
Alignment:
Q  78 gtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaa 176  Q
    ||||||||||| || ||||||||| ||||||||| ||||||||||| |||| | ||||| |||| ||  || ||| ||||||||| | ||||||||| ||    
T  15179460 gtaaatattacaaaattgtcctttgtttgtatgtgtattaaatttgacttttcgtatttcaagacaagttagtaggattaattagggatatgtttaaaaa 15179559  T
Q  177 aaataa-aataaatgcat 193  Q
    | |||| |||||||||||    
T  15179560 atataataataaatgcat 15179577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 44652899 - 44652798
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgc 191  Q
    |||| |||| ||||||||| ||||||||||| |||| ||||||| || | || | | ||||||||||||| |||||||||| |||||| | |||||||||    
T  44652899 ttgttctttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagttagtagtattaattaggggtatgtttaggaaaaaaataataaatgc 44652800  T
Q  192 at 193  Q
    ||    
T  44652799 at 44652798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 28334259 - 28334151
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaat-aaaataaatg 190  Q
    |||||||||  || ||||| |||||||||||  ||| |||||||||||  || ||| | ||||||||||| |||||||||| ||||||| ||||||||||    
T  28334259 ttgtcctttgcttatatgtgtattaaatttgaattttcatattttaaggcaagatagtggtattaattaggggtatgtttaggaaaaataaaaataaatg 28334160  T
Q  191 catttagta 199  Q
    ||| |||||    
T  28334159 catctagta 28334151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 47643593 - 47643712
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| |||| |||| ||||||||||| |||| || |||| |||| ||  || ||||||||||||  ||||||||| | |||||    
T  47643593 aatattactaaattgtcctttgtttgcatgtgtattaaatttgacttttcaaatttcaagacaagttagtagtattaattaagggtatgtttta-aaaaa 47643691  T
Q  180 taa-aataaatgcatttagta 199  Q
    ||| ||||||||||| |||||    
T  47643692 taataataaatgcatctagta 47643712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 44395588 - 44395695
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagaga-aataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||| |||||||||||||||||||||  ||| ||||||| |||| |   |||||||||||||||||| ||| ||||  |||||    
T  44395588 aatattacaaaattatcctttgtttgtatgtatattaaatttgatttttcatatttcaagacatgttaatagtattaattagagatatatttagaaaaaa 44395687  T
Q  180 taaaataa 187  Q
     |||||||    
T  44395688 aaaaataa 44395695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 299128 - 299010
Alignment:
Q  106 gtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataa-aataaatgcatttagtagtct 203  Q
    ||||||||||| |||||| |||| |||||| ||||| ||| || || |||||||||| ||||| ||||  |||||||| ||||||||||  || || | |    
T  299128 gtatgtatatttaatttgacttttcatattctaagacaaacaagtaatattaattaggggtatatttagaaaaaataataataaatgcacctaatatttt 299029  T
Q  204 gtataagagcttatattta 222  Q
    ||||||| |||||||||||    
T  299028 gtataagggcttatattta 299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 31305362 - 31305436
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaat 146  Q
    |||||||  |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| ||||    
T  31305362 ttgtatgctaatattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagataaat 31305436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 47754018 - 47753968
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||| |||||    
T  47754018 tagtattaattaggggtatgtttaggaaaaatataataaatgcatctagta 47753968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 16582577 - 16582646
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||| ||| |||||||| || ||||| ||||||||||||| ||||||||||| |||| ||||||| ||||    
T  16582577 ttgtgtgttaatattacgaaattgtcttttatttgtatgtgtattaaatttgacttttcatatttcaaga 16582646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 20564828 - 20564949
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgttta-agaaaa 178  Q
    |||||||| || ||||| ||| |||| |||| ||||||||||| |||| ||||||| |||| ||  || |||||||||||||| |||||||||  |||||    
T  20564828 aatattacaaaattgtcttttgtttgaatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattagatgtatgtttagggaaaa 20564927  T
Q  179 ataa-aataaatgcatttagta 199  Q
    |||| || |||||||| |||||    
T  20564928 ataataacaaatgcatctagta 20564949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 51390585 - 51390469
Alignment:
Q  83 tattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaata 181  Q
    |||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || |||| |||||||  |||||||||| |||||| |    
T  51390585 tattaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagttttaattaagggtatgtttaggaaaaa-a 51390487  T
Q  182 aaataaatgcatttagta 199  Q
     ||||||||||| |||||    
T  51390486 taataaatgcatctagta 51390469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 3072216 - 3072299
Alignment:
Q  107 tatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatg 190  Q
    ||||| ||||||||||| |||| ||||||| |||| || | | ||||||||||||||||||||||| ||||||| | ||||||||    
T  3072216 tatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattagaggtatgttt-agaaaaaaataataaatg 3072299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 4081970 - 4082098
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| ||||||||||| || || ||| | ||||||| |||||||||||  ||| ||||||| |||| ||  || || |||||||||| | ||||||    
T  4081970 ttgtatgttaatattactaaattatcatttgtctgtatgtgtattaaatttgatttttcatatttaaagacaagttagtattattaattagggatatgtt 4082069  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||  | || ||||||||||||||    
T  4082070 taggaaaataataacaaatgcatttagta 4082098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 34012555 - 34012658
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatt 194  Q
    |||||| ||| ||||| ||||||||||  |||| ||||||| |||| || ||| ||||||||||||  |||||||||| |||||| | |||||||||||     
T  34012555 tcctttgtttatatgtgtattaaatttaacttttcatatttcaagacaagatagtagtattaattaagggtatgtttaggaaaaa-ataataaatgcatc 34012653  T
Q  195 tagta 199  Q
    |||||    
T  34012654 tagta 34012658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 46495353 - 46495409
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtcttt 128  Q
    |||| ||| |||||||  || ||||||||||||||||||||||||||||||| ||||    
T  46495353 ttgtgtgttaatattatcaaattgtcctttatttgtatgtatattaaatttgacttt 46495409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 291694 - 291587
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| ||||||||||| ||||| ||| ||||||| | ||||||||||  ||||  ||||||||||| ||  || |||||||||||||  |||| ||    
T  291694 ttgtatgttaatattactaaattgtcatttgtttgtatttgtattaaatttaactttttatattttaagataagttagtagtattaattaggagtatatt 291595  T
Q  171 taagaaaa 178  Q
    || |||||    
T  291594 taggaaaa 291587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 30898613 - 30898503
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||| ||||||||| |||||||| || || | |||||||||||| ||  || ||| ||||| ||| |||||||||| ||||||    
T  30898613 aatattaccaaattatcctttgtttgtatgtgtattaaatgtgactattcatattttaagataagttagtagcattaaataggggtatgtttaggaaaaa 30898514  T
Q  180 taaaataaatg 190  Q
     | ||||||||    
T  30898513 aataataaatg 30898503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 47071011 - 47070921
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||||||| || ||||| ||| ||||||||  |||||||||||  ||| ||||||| |||| || | | ||||||||||||||||||||||    
T  47071011 aatattaccaaattgtcatttgtttgtatgcgtattaaatttgatttttcatatttcaagacaagttagtagtattaattagaggtatgtt 47070921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 10842380 - 10842489
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga-gaaataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || || ||| ||||||||| | ||||||||| |||| ||||||| |||| ||  |||  ||||||||||| |||||||||| ||||||    
T  10842380 aatattaccaaattatcgtttgtttgtatgtgtgttaaatttgacttttcatatttcaagatgagttaacggtattaattaggggtatgtttaggaaaaa 10842479  T
Q  180 taaaataaat 189  Q
     | |||||||    
T  10842480 aataataaat 10842489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 13698916 - 13698996
Alignment:
Q  113 tattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgca 192  Q
    |||||||||||  ||| |||||||||||| || | | |||||||||||| ||||||||||| | |||| | ||||||||||    
T  13698916 tattaaatttgatttttcatattttaagataagttagtagtattaattataggtatgtttagggaaaaaataataaatgca 13698996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 13723528 - 13723468
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||| ||||    
T  13723528 aatattaccaaattatcctttgtttgtatgtgtattaaatttgacttttcatatttcaaga 13723468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 32047486 - 32047606
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttc-catattttaagagaa-ataatagtattaattagaggtatgt 169  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| |  |||||||| ||||  ||||||| |||| || ||| |||||||| |||| |||||||    
T  32047486 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgt--taaatttgactttttcatatttcaagacaagatagtagtattatttaggggtatgt 32047583  T
Q  170 ttaagaaaaataaaataaatgcat 193  Q
    |||||||||| | |||||||||||    
T  32047584 ttaagaaaaa-ataataaatgcat 32047606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 34696942 - 34696814
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| |||||||||  || ||||||| |||| | ||||| |||| ||| || ||||||||||||| |  |||||    
T  34696942 ttgtgtgttaatattacgaaattgtcatttgtttgtatgtgcatgaaatttgacttttcctatttcaagacaaaatagtagtattaattagggacatgtt 34696843  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||| ||| |||||    
T  34696842 taggaaaaaaataataaatacatctagta 34696814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 38680519 - 38680583
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattt 136  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| |||||||||||||||| |||||||    
T  38680519 ttgtgtgttaatattatcaaattgtcatttgtttgtatgtgtattaaatttgtctttgcatattt 38680583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 52141203 - 52141107
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagt 198  Q
    ||||||||| ||||||||||| ||||  ||||||||||| ||  || || |||||| ||| | |||||||| |||||| | ||||||||||| ||||    
T  52141203 tttgtatgtgtattaaatttgactttttatattttaagacaagttagtaatattaactagggatatgtttaggaaaaaaataataaatgcatctagt 52141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 4857544 - 4857428
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||| ||| ||||||||| ||||||||||| |||| |||||||||||| ||  || |||||||||||||  ||||||||||||||||    
T  4857544 aatattactaaattgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagataagttagtagtattaattaggagtatgtttaagaaaaa 4857445  T
Q  180 taa-aataaatgcattt 195  Q
     || |||||||||||||    
T  4857444 aaataataaatgcattt 4857428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 25017733 - 25017605
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| |||||||||||| ||  |||||||||||||||| ||||| ||    
T  25017733 ttgtgtgttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttaatagtattaattaggggtatatt 25017634  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  25017633 taggaaaaaaataataaatgcatatagta 25017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 29866234 - 29866362
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| |||||||||||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| ||||||||    
T  29866234 ttgtgtgttaatattaccaagttgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaggggtatgtt 29866333  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| |  |||||||||| |||||    
T  29866334 taggaaaaaaattataaatgcatctagta 29866362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 16496490 - 16496589
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||| ||||||||||||||||||||| |||| ||||||| |||| ||  ||||||||||| ||| ||||||||||||||||||    
T  16496490 aatattaccaaattatcctttgtttgtatgtatattaaatttgacttttcatatttcaagataagttaatagtattagttaaaggtatgtttaagaaaaa 16496589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 35569055 - 35568936
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || | |||| ||||||||| ||||||||||| |||| ||||||| |||| ||| || ||||| ||||||| |||||||||| |||||     
T  35569055 aatattactaaattattctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaaattagtagtactaattaggggtatgtttaggaaaat 35568956  T
Q  180 taaaataaatgcatttagta 199  Q
     | |||||||||||||||||    
T  35568955 aataataaatgcatttagta 35568936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 40979262 - 40979164
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaa 178  Q
    |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| |||||||||| |||||    
T  40979262 aatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttaaagacaagatagtagtattaattaggggtatgtttaggaaaa 40979164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 3559086 - 3558958
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||| ||||  ||||||||    
T  3559086 ttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagataagttagtagtatttattaagggtatgtt 3558987  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  3558986 taggaaaaaaataataaatgcatctagta 3558958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 39690536 - 39690417
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  39690536 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 39690437  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  39690436 aataataaatgcatctagta 39690417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 38972182 - 38972064
Alignment:
Q  76 atgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaag 174  Q
    |||| |||||||| || ||||||||| ||||||||| ||||||||||| ||||  |||||| |||| ||  || ||||||||||||  |||||||||| |    
T  38972182 atgttaatattaccaaattgtcctttgtttgtatgtgtattaaatttgactttttatatttcaagataagttagtagtattaattaagggtatgtttagg 38972083  T
Q  175 aaaaataaaataaatgcat 193  Q
    ||||| | |||||||||||    
T  38972082 aaaaaaataataaatgcat 38972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 3247333 - 3247232
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||  ||||||||||||| ||||| ||    
T  3247333 ttgtatgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagaaaagattgtagtattaattaggggtatatt 3247234  T
Q  171 ta 172  Q
    ||    
T  3247233 ta 3247232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 4745181 - 4745302
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagaga----aataatagtattaattagaggtatgtttaagaa 176  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| ||||  ||||||||||| |    ||||||||||||||||| |||||| ||| ||||    
T  4745181 aatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatattttaagacaggttaataatagtattaatta-aggtatatttcagaa 4745279  T
Q  177 aaataaaataaatgcatttagta 199  Q
    ||  ||||||||||||| |||||    
T  4745280 aataaaaataaatgcatctagta 4745302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 4738675 - 4738802
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||| ||||| ||| ||||| ||||||||||| |||| ||||||| |||| ||  || |||||||| |||| ||||||||    
T  4738675 ttgtgtgttaatattactaaattgacctttgtttttatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattagttaggggtatgtt 4738774  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||||  ||||||||||| |||||    
T  4738775 taggaaaaat-taataaatgcatctagta 4738802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 18729668 - 18729760
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgtttaagaaaaataa-aataaatgcat 193  Q
    ||||||||| ||||||||||| |||| ||||||| ||   |||| ||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  18729668 tttgtatgtgtattaaatttgacttttcatatttcaaattaaattaatagtattaattaggggtatgtttaggaaaaataataataaatgcat 18729760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 15898522 - 15898363
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||||||| ||||||||| ||||||||||| | || || |||| |||| || | |  ||||||||||| | |||||||    
T  15898522 ttgtgtgttaatattatcaaattgtcctttgtttgtatgtgtattaaatttggcctttcaaatttcaagacaagttagcagtattaattaaaagtatgtt 15898423  T
Q  171 taagaaaaataa-aataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
    || ||||||||| ||||||||||| ||||| | || | ||||| ||||||||||| ||||    
T  15898422 taggaaaaataataataaatgcatctagtaatttgaaaaagagtttatatttagggacaa 15898363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 16969446 - 16969547
Alignment:
Q  99 tttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataa-aataaatgcattta 196  Q
    ||||||||||||| | |||||||||  |||  ||||||||||| || | | || |||||||||||||||||||| |||||||||| ||||||||||||||    
T  16969446 tttatttgtatgtgtgttaaatttgaattttaatattttaagacaatttagtaatattaattagaggtatgttt-agaaaaataataataaatgcattta 16969544  T
Q  197 gta 199  Q
    |||    
T  16969545 gta 16969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 36177337 - 36177466
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| || | ||| || ||||||||||||  ||||||||    
T  36177337 ttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaaaaaagtagtattaattaagggtatgtt 36177436  T
Q  171 taagaaaaataa-aataaatgcatttagta 199  Q
    || |||||| || ||||||| ||| |||||    
T  36177437 taggaaaaaaaataataaatacatctagta 36177466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 21574939 - 21574832
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||||||| |||||| || |||||||||||||||| ||| ||| |||| ||  |  ||||||||||||| ||||||||    
T  21574939 ttgtatgttaatattaccaaattgtcctttgtttgta-gtgtattaaatttgtcttttcatgtttcaagacaagtttgtagtattaattaggggtatgtt 21574841  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  21574840 taggaaaaa 21574832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 27642556 - 27642675
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || |||||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||  ||||||||| |||||||    
T  27642556 aatattactaaattatcctttgtttgtatgtgtattaaatttgactttttgtatttcaagataaattagtaggattaattaagggtatgttt-agaaaaa 27642654  T
Q  180 taa-aataaatgcatttagta 199  Q
    ||| ||||||||||| |||||    
T  27642655 taataataaatgcatctagta 27642675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 42644537 - 42644429
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||  |||||||  || ||||| ||| |||||||||||||||||||||||||| ||||||| |||| ||  || | ||||||||||  ||||||||    
T  42644537 ttgtatgctaatattatcaaattgtcatttgtttgtatgtatattaaatttgtcttttcatatttcaagacaagttagttgtattaattaagggtatgtt 42644438  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  42644437 taggaaaaa 42644429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 16165 - 16046
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||| | ||||||||||| |||| || |||| |||| ||  || |||||||||  || |||||||||| |||||     
T  16165 aatattactaaattgtcctttgtttgtatttgtattaaatttgacttttcacatttcaagacaagttagtagtattaaccaggggtatgtttaggaaaat 16066  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  16065 aataataaatgcatctagta 16046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 5151250 - 5151152
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||||||||| ||| ||||||||||| |||| ||||||| |||| ||  || ||||| ||||||| |||||||||| ||||||    
T  5151250 aatattaccaaattgtcctttatttgtgtgtgtattaaatttgacttttcatatttcaagacaagttagtagtactaattag-ggtatgtttaggaaaaa 5151152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 12895259 - 12895140
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| |||||||||||  |||  | ||||||||| || | | | |||||||||||||||||||||| ||||||    
T  12895259 aatattaccaaattgtcttttgtttgtatgtgtattaaatttgattttttaaattttaagacaagttagttgtattaattagaggtatgtttaggaaaaa 12895160  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||| ||| |||||    
T  12895159 aataataaatacatctagta 12895140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 9946408 - 9946294
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||| |||||| || ||||||||| | ||||  |||||| |||| || ||| ||||||||||||| |||||||||| ||||||    
T  9946408 aatattacgaaattatcctttgtttgtacgtgtattaaattcgactttttatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaaa 9946309  T
Q  180 taa-aataaatgcat 193  Q
     || |||||||||||    
T  9946308 aaataataaatgcat 9946294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 15967064 - 15967014
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||||||| ||||| ||||||||||| | ||||||||||| |||||    
T  15967064 tagtattaattaggggtatctttaagaaaaaaataataaatgcatctagta 15967014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 19089071 - 19089013
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaa 139  Q
    ||||||||||| ||||| ||| ||||||| | ||||||||||| |||| ||||||||||    
T  19089071 aatattactaaattgtcatttgtttgtatttgtattaaatttgacttttcatattttaa 19089013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 5845242 - 5845343
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgc 191  Q
    ||||| ||| ||||||||| ||||||||||| |||| ||||||| || | ||  || |||||||||||||  ||||||||| ||||||   |||||||||    
T  5845242 ttgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaatacaagttagtagtattaattaggagtatgtttaggaaaaaattaataaatgc 5845341  T
Q  192 at 193  Q
    ||    
T  5845342 at 5845343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 21912174 - 21912287
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||| ||| ||||| ||| ||||||||| |||||| |||| ||||   ||||| |||| |||| | ||| ||||||||| |||||||||| |||||     
T  21912174 aatattattaaattgtcttttgtttgtatgtgtattaagtttgactttttgtatttcaagacaaattagtaggattaattaggggtatgtttaggaaaat 21912273  T
Q  180 taaaataaatgcat 193  Q
     | |||||||||||    
T  21912274 aataataaatgcat 21912287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 556055 - 556147
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgttta 172  Q
    ||||||||||| ||||| ||| | ||||| | ||||||||||| |||| ||||||| |||| ||| ||||  |||||||||| | ||||||||    
T  556055 aatattactaaattgtcatttttctgtatatgtattaaatttgacttttcatatttcaagacaaattaatgatattaattagtgctatgttta 556147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 7736056 - 7736188
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtttaagaaaaataaaataaatgcatttagtagt 201  Q
    ||||||||| | ||||||||| |||| ||||||| |||| || | |  |||||||||||| | |||||||| |||||| | ||||||||| | ||||| |    
T  7736056 tttgtatgtgtgttaaatttgacttttcatatttcaagataagttagcagtattaattagggatatgtttaggaaaaaaataataaatgcgtctagtaat 7736155  T
Q  202 ctgtataagagcttatatttaggaacaattttt 234  Q
     || | | | | ||||||||||| |||||||||    
T  7736156 ttgaaaaggggtttatatttagggacaattttt 7736188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 10934051 - 10934115
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattt 136  Q
    |||||||| |||||||| || || | |||| ||||||||| ||||||||||| |||| |||||||    
T  10934051 ttgtatgttaatattaccaaattattctttgtttgtatgtgtattaaatttgacttttcatattt 10934115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 25690665 - 25690617
Alignment:
Q  151 gtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||||| ||||||||||||||||| | ||||||| ||| |||||    
T  25690665 gtattaattaggggtatgtttaagaaaaaaataataaatacatctagta 25690617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 30348136 - 30348029
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||| ||| ||||||||||| |||| ||||||| |||  ||  || ||||||||||||| ||||||||    
T  30348136 ttgtgtgttaatattaccaaattttcctttgtttgtgtgtgtattaaatttgacttttcatatttcaaggcaagttagtagtattaattag-ggtatgtt 30348038  T
Q  171 taagaaaaa 179  Q
    || ||||||    
T  30348037 tatgaaaaa 30348029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 25477279 - 25477398
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||||||||||| |||||||||| ||||||    
T  25477279 aatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaattaggggtatgtttaggaaaaa 25477378  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  25477379 aataataaatgcatctagta 25477398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 52226067 - 52226193
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaa 173  Q
    ||||| |||||||  || ||||||||| ||| ||||| ||||||||||| |||| ||||||| |||| || | | ||||||||||||| |||||||||||    
T  52226067 tatgttaatattatcaaattgtcctttgtttatatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaggggtatgtttaa 52226166  T
Q  174 gaaaaataa-aataaatgcatttagta 199  Q
    ||||||||| ||||||||||| |||||    
T  52226167 gaaaaataataataaatgcatctagta 52226193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 39237649 - 39237521
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||||| ||||||||| ||||||||||| ||||  |||||| |||| || |||||| |||||||||| ||||||||    
T  39237649 ttgtgtgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgactttttatatttcaagacaagataatattattaattaggggtatgtt 39237550  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||| ||| |||||    
T  39237549 taggaaaaaaataataaatacatctagta 39237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 40411403 - 40411275
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||  |||| ||||||| |||| || |||||| |||||||||| ||||||||    
T  40411403 ttgtgtgttaatattatgaaattgtcatttgtttgtatgtgtattaaatttaacttttcatatttcaagacaagataataatattaattaggggtatgtt 40411304  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| | ||||||||||| |||||    
T  40411303 taagaaaaaaataataaatgcatctagta 40411275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 20262454 - 20262328
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||  ||| ||||||||| ||||||||||| |||| ||||||| || | || ||| ||||||||||||  ||||||||    
T  20262454 ttgtgtgttaatattacgaaattgttatttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagatagtagtattaattaagggtatgtt 20262355  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    ||||||||  |||||||||||||||||||    
T  20262354 taagaaaa--aaaataaatgcatttagta 20262328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 54438555 - 54438676
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||||||||||||| ||||||||||| |||| ||||||| || | || ||| |||||||||||||||| |||||    
T  54438555 ttgtgtgttaatattacgaaattatcctttatttgtatgtgtattaaatttgacttttcatatttcaaaacaagatagtagtattaattagaggcatgtt 54438654  T
Q  171 taagaaaaataa-aataaatgc 191  Q
    || |||||| || |||||||||    
T  54438655 taggaaaaaaaataataaatgc 54438676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 44812664 - 44812545
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga-gaaataatagtattaattagaggtatgtttaa 173  Q
    ||||| |||||||| || ||||| ||||||||| ||| ||||||||||| |||| ||||||| || |  ||||| ||||||||||||| ||||| ||||     
T  44812664 tatgttaatattacaaaattgtcatttatttgtgtgtgtattaaatttgacttttcatatttcaaaacaaaatagtagtattaattaggggtatctttag 44812565  T
Q  174 gaaaaataaaataaatgcat 193  Q
    |||||| | |||||||||||    
T  44812564 gaaaaaaataataaatgcat 44812545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 31840141 - 31840262
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagaga-aataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||||||||  |||||| |||| | | |||||||||||||||| | ||||||    
T  31840141 ttgtgtgttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgtctttttatatttcaagacagattaatagtattaattagggatatgtt 31840240  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    | |||||||||  ||||||||||    
T  31840241 t-agaaaaatatgataaatgcat 31840262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 33246557 - 33246400
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || |||||||||||||  |||||||    
T  33246557 ttgtgtgttaatattaccaaattatcctttgtttgtatgtgtattaaatttgactttacatatttcaagacaagttagtagtattaattaggagtatgtt 33246458  T
Q  171 taagaaaaataaaataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
    | ||||||| | ||||||||||| ||||| | || | ||||| ||| ||||||| ||||    
T  33246457 t-agaaaaaaataataaatgcatctagtaatttgaaaaagagtttacatttagggacaa 33246400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 30153273 - 30153162
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||||||||||||| ||||||||||| |||| ||||||| |||| ||  || |||||||||||||| ||||||||| ||||||    
T  30153273 aatattaccaaattatcctttatttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaga-gtatgtttaggaaaaa 30153175  T
Q  180 taaaataaatgcat 193  Q
     | |||||||||||    
T  30153174 -ataataaatgcat 30153162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 22651509 - 22651637
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| | | ||| |||| ||  || || |||||||||| ||||||||    
T  22651509 ttgtatgttaatattaccaaattgtcttttgtttgtatgtgtattaaatttgactttacgtgtttcaagacaagttattaatattaattaggggtatgtt 22651608  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  22651609 taggaaaaaaataataaatgcatctagta 22651637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 34643440 - 34643567
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||||||| ||||||| ||| ||||| ||| ||||||||| ||||||||||   ||| ||||||| |||| |||| | ||||||||||||  ||||||||    
T  34643440 ttgtatgttaatattaataaattgtc-tttgtttgtatgtgtattaaatttaatttttcatatttcaagataaattagtagtattaattaagggtatgtt 34643538  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    | |||| || ||||||||||||| |||||    
T  34643539 ttagaagaaaaaaataaatgcatctagta 34643567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 12624750 - 12624869
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||   |||||||||| ||| || ||| |||||| || |||||||||| |||||     
T  12624750 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtattttaagacaaattagtaggattaatgaggggtatgtttaggaaaat 12624849  T
Q  180 taaaataaatgcatttagta 199  Q
     | | ||||||||| |||||    
T  12624850 aatagtaaatgcatctagta 12624869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 41945824 - 41945705
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| ||||||| | ||||||||||| |||| ||||||| |||| || ||| || |||||| |||  ||||||||| ||||||    
T  41945824 aatattacgaaattgtcctttgtttgtatatgtattaaatttgacttttcatatttcaagacaagatagtaatattaagtaggagtatgtttaggaaaaa 41945725  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  41945724 aataataaatgcatatagta 41945705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 56217092 - 56217005
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||| ||||||| | ||||||||||  |||| ||||||| |||| || ||| |||||||||||||||||||||||| ||||||    
T  56217092 ttgtcctttgtttgtatttgtattaaatttaacttttcatatttcaagataagatagtagtattaattagaggtatgtttaggaaaaa 56217005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 46729350 - 46729472
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||||| | ||||||||| ||||||||||| |||| ||||||| |||  || || || ||||||||||| ||||||||    
T  46729350 ttgtgtgttaatattacgaaattgtcctatgtttgtatgtgtattaaatttgacttttcatatttcaaggcaagatgatggtattaattaggggtatgtt 46729449  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    |  |||||| | |||||||||||    
T  46729450 tgggaaaaaaataataaatgcat 46729472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 21171796 - 21171896
Alignment:
Q  99 tttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttag 197  Q
    ||||||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| ||||||||| ||||||| | |||||||| || |||    
T  21171796 tttatttgtatgtgtattaaatttgactttacatatttcaagataagttagtagtattaattaggggtatgttt-agaaaaaaataataaatgtatatag 21171894  T
Q  198 ta 199  Q
    ||    
T  21171895 ta 21171896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 21473712 - 21473788
Alignment:
Q  152 tattaattagaggtatgtttaagaaaaataaaataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
    ||||||||||||||||||||| |||||| | || ||||| || ||||| | ||||||||||||||||||||| |||||    
T  21473712 tattaattagaggtatgtttaggaaaaa-ataacaaatgtatctagtaatttgtataagagcttatatttagcaacaa 21473788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 22750893 - 22750780
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| ||||||| || |||||     
T  22750893 aatattaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaacttagtagtattaattaggggtatgtataggaaaat 22750794  T
Q  180 taaaataaatgcat 193  Q
     | |||||||||||    
T  22750793 aataataaatgcat 22750780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 29584948 - 29585066
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| ||||  ||||||||||| ||  ||||||||||||||| | |||  ||| |||||||    
T  29584948 aatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatattttaagacaagttaatagtattaattaaaagta--ttttagaaaaa 29585045  T
Q  180 taa-aataaatgcatttagta 199  Q
    ||| ||||||||||| |||||    
T  29585046 taataataaatgcatctagta 29585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 48472555 - 48472431
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||| ||||||| ||||  |||||| |||| || ||||||||||||||||| |||||| |    
T  48472555 ttgtgtgttaatattacgaaattatcctttctttgtatgtgtatgaaatttgactttttatatttcaagacaagataatagtattaattaggggtatg-t 48472457  T
Q  171 taagaaaaataaaataaatgcattta 196  Q
    || |||||| | |||||| |||||||    
T  48472456 taggaaaaaaataataaaagcattta 48472431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 51787847 - 51787924
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||| ||||||||||| |||| ||||||| |||| ||| |||||||||||||||| | |||||||| ||||||    
T  51787847 tttgtatgtgtattaaatttgacttttcatatttcaagacaaaataatagtattaattagggatatgtttaggaaaaa 51787924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 20185716 - 20185608
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||| | ||| ||||||| | ||||||||||| |||| ||||||| |||| |||| | ||||||||||||  ||||||||    
T  20185716 ttgtgtgttaatattaccaaattgccttttgtttgtatttgtattaaatttgacttttcatatttcaagacaaattagtagtattaattaagggtatgtt 20185617  T
Q  171 taagaaaaa 179  Q
    |||||||||    
T  20185616 taagaaaaa 20185608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 20291394 - 20291512
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || || ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||| | |||||||| ||||||    
T  20291394 aatattactaaattatcatttgtttgtatgtgtattaaatttgacttttcatatttcaagataagttagtagtattaattag-gatatgtttaggaaaaa 20291492  T
Q  180 taaaataaatgcatttagta 199  Q
       ||||||| |||||||||    
T  20291493 agtaataaatacatttagta 20291512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 32107911 - 32108010
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaataa-aataaatg 190  Q
    ||||| ||||||||||| | ||||||||||| |||| |||||||||||| ||| || || ||||||| |  | |||||||||||||||||| ||||||||    
T  32107911 ttgtcttttatttgtatatgtattaaatttgacttttcatattttaagataaattagtaatattaataaaggatatgtttaagaaaaataataataaatg 32108010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 43509126 - 43509249
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| ||||||||||  |||| || |||| |||| |||| | ||||||||||||| ||||| ||    
T  43509126 ttgtgtgttaatattatcaaattgtcttttgtttgtatgtgtattaaatttaacttttcaaatttcaagacaaattagtagtattaattaggggtatctt 43509225  T
Q  171 taagaaaaataa-aataaatgcat 193  Q
    ||||||||| || |||||||||||    
T  43509226 taagaaaaaaaataataaatgcat 43509249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 52552562 - 52552463
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || |||||| |||||| || ||| ||||||| |||| ||||||| |||| || | | ||||||||||||| |||||||||||||||||    
T  52552562 aatattaccaaattatcctttgtttgtacgtgtataaaatttgacttttcatatttcaagataagttagtagtattaattaggggtatgtttaagaaaaa 52552463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 20116495 - 20116624
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtatt-aattagaggtatgt 169  Q
    |||| ||| |||||||  || ||||| ||| ||||||||| |||||||||||  ||| ||||||| |||| || ||||||||||| |||||| |||||||    
T  20116495 ttgtgtgttaatattaggaaattgtcatttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagataatagtattaaattaggggtatgt 20116594  T
Q  170 tta-agaaaaataaaataaatgcatttagta 199  Q
    ||| | |||||| |||||||||||| |||||    
T  20116595 ttagacaaaaat-aaataaatgcatctagta 20116624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 31294201 - 31294323
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgtt 170  Q
    |||| ||||||| ||||||  ||||  ||| |||||||||  |||  ||||| |||| |||||| ||||| | || |||||||||||||||| | ||| |    
T  31294201 ttgtgtgtaaattttactacattgttatttgtttgtatgtgaatttgatttgacttttcatattgtaagacatattaatagtattaattagaagcatgct 31294300  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    ||||||||||| |||||||||||    
T  31294301 taagaaaaatataataaatgcat 31294323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 31552257 - 31552334
Alignment:
Q  116 taaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaataaaataaatgca 192  Q
    ||||||||  ||| |||||||||||| |||| | ||||||||||||| ||||||||||  ||||| ||||||||||||    
T  31552257 taaatttgatttttcatattttaagacaaatgagtagtattaattaggggtatgtttagaaaaaaaaaaataaatgca 31552334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 31917453 - 31917529
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||| ||||||||||| ||||  ||||||||||| || ||| ||||||||||||| |||||||||| ||||||    
T  31917453 tttgtatgtgtattaaatttgactttttatattttaagataagatagtagtattaattag-ggtatgtttaggaaaaa 31917529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 41920098 - 41919985
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| |||||||||  | |||||||| |||| ||||||| |||| || | | ||||||||||||| ||||||||    
T  41920098 ttgtgtgttaatattaccaaattgtcttttgtttgtatgtgaaataaatttgacttttcatatttcaagataagttagtagtattaattaggggtatgtt 41919999  T
Q  171 taagaaaaataaaa 184  Q
    ||| ||||| ||||    
T  41919998 taaaaaaaaaaaaa 41919985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 48609502 - 48609429
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagtagtctgtataagagcttatattta 222  Q
    ||||||||||||||||||| ||||||||||| | ||||||| ||| ||||| | || ||| ||| |||||||||    
T  48609502 tagtattaattagaggtatatttaagaaaaaaataataaatacatctagtaatttgaatatgagtttatattta 48609429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 54359759 - 54359855
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||||||| ||||||||||  |||| ||||||| |||| || ||| |||||||||||||  ||||||||| |||||| | ||||||||||| |||||    
T  54359759 tttgtatgtgtattaaatttaacttttcatatttcaagacaagatagtagtattaattaggtgtatgtttaggaaaaa-ataataaatgcatctagta 54359855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 24072848 - 24072940
Alignment:
Q  108 atgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    |||| ||||||||||| |||| ||||||| |||| || ||  ||||||||||||  |||||||||| |||||| | ||||||||||| |||||    
T  24072848 atgtgtattaaatttgacttttcatatttcaagacaagatggtagtattaattaagggtatgtttaggaaaaaaataataaatgcatctagta 24072940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 52768959 - 52768887
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa 144  Q
    |||| ||| |||||||| || ||||| ||||||||||||| ||||||||||| |||| || |||| |||||||    
T  52768959 ttgtgtgtgaatattacaaaattgtcatttatttgtatgtgtattaaatttgactttacagatttcaagagaa 52768887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 41459641 - 41459696
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattt 136  Q
    ||||||||||| ||||| ||||||| ||||| ||||||||||| |||| |||||||    
T  41459641 aatattactaaattgtcttttatttatatgtgtattaaatttgacttttcatattt 41459696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 52198779 - 52198660
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || || || ||||||||||||| |||| |||||| ||||  |||||| || | || | | ||||||||||||| |||||||||| ||||||    
T  52198779 aatattaccaaattatcttttatttgtatgtgtattgaatttgactttttatatttcaaaacaagttagtagtattaattaggggtatgtttaggaaaaa 52198680  T
Q  180 taaaataaatgcatttagta 199  Q
     | |||||||| || |||||    
T  52198679 aataataaatgtatctagta 52198660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 56373404 - 56373283
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||||| ||| |||||||||||| ||| ||||||| |||| ||  || ||||||||||||  |||| |||    
T  56373404 ttgtgtgttaatattaccaaattgtcatttgtttgtctgtgtattaaatttgttttttcatatttcaagacaagttattagtattaattaagggtacgtt 56373305  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    || |||||| | |||||||||||    
T  56373304 taggaaaaa-ataataaatgcat 56373283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 5448707 - 5448776
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||| ||||    
T  5448707 ttgtgtgttaatattacgaaattatcctttgtttgtatgtgtattaaatttgacttttcatatttcaaga 5448776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 14602706 - 14602583
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatag--tattaattagaggtatgttt--aaga 175  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| ||||  ||||||||||| ||  || |||  |||||||||| |||||||||  || |    
T  14602706 aatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatattttaagataagttagtagtatattaattaggggtatgtttagaaaa 14602607  T
Q  176 aaaataaaataaatgcatttagta 199  Q
    || ||| ||||||||||| |||||    
T  14602606 aatatataataaatgcatctagta 14602583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 20016568 - 20016694
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| |||||||| || || |||||| ||||||||  |||||||||||  ||| ||||||| |||| ||  || ||| |||||||| | |||||||    
T  20016568 ttgtatgttaatattaccaaattttcctttgtttgtatg--tattaaatttgagtttacatatttcaagacaagttagtagcattaattaaaagtatgtt 20016665  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | |||||||| || |||||    
T  20016666 tatgaaaaaaataataaatgaatctagta 20016694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 31937452 - 31937383
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||| ||| ||||||| ||| ||||| ||| ||||||||||||| ||||||| |||| ||||||| ||||    
T  31937452 ttgtgtgttaatattattaaattgtcatttgtttgtatgtatataaaatttgacttttcatatttcaaga 31937383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 51918685 - 51918589
Alignment:
Q  103 tttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaataaaataaatgcatttagta 199  Q
    ||||| ||||||||||||||| |||| ||||||| |||| ||  ||| |||||||||||  |||||||| | |||||| | ||||||||||| |||||    
T  51918685 tttgtttgtatattaaatttgacttttcatatttcaagacaagttaacagtattaattaagggtatgttgaggaaaaa-ataataaatgcatctagta 51918589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 19654483 - 19654599
Alignment:
Q  82 atattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaat 180  Q
    ||||||| || || || ||||||||||||| |||||||||| ||||| ||||||| || | ||  || |||||||| ||||  ||||||||| ||||||     
T  19654483 atattaccaaattatcatttatttgtatgtgtattaaatttatcttttcatatttcaaaacaagttagtagtattagttaggagtatgtttaggaaaaaa 19654582  T
Q  181 aa-aataaatgcattta 196  Q
    || |||||| |||||||    
T  19654583 aataataaacgcattta 19654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 26203184 - 26203244
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||||||| || ||||| ||| ||||||||||||||||||||| |||| | ||||| ||||    
T  26203184 aatattacaaaattgtcttttctttgtatgtatattaaatttgacttttcgtatttcaaga 26203244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 31552188 - 31552236
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttg 123  Q
    ||||| ||||||||||| ||||| ||||||| ||||| |||||||||||    
T  31552188 tatgttaatattactaaattgtcatttatttatatgtgtattaaatttg 31552236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1091 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 1973 - 1845
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||  |||| |||| | ||||||||||||| ||||||||    
T  1973 ttgtgtgttaatattaccaaattatcctttgtttgtatgtgtattaaatttgacttttcatattgcaagacaaattagtagtattaattaggggtatgtt 1874  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  1873 taggaaaaacataataaatgcatctagta 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 16327168 - 16327297
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat--agtattaattagaggtatgt 169  Q
    |||| ||| |||||||| || ||||| ||| ||||||| | ||||||||||  |||| ||||||| |||| || | ||  ||||||||||||||||||||    
T  16327168 ttgtgtgttaatattaccaaattgtcatttgtttgtatttgtattaaatttaacttttcatatttcaagacaagttatttagtattaattagaggtatgt 16327267  T
Q  170 ttaagaaaaataaaataaatgcatttagta 199  Q
    ||| |||||||| ||||||||||| |||||    
T  16327268 ttaggaaaaatataataaatgcatctagta 16327297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 16350566 - 16350695
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat--agtattaattagaggtatgt 169  Q
    |||| ||| |||||||| || ||||| ||| ||||||| | ||||||||||  |||| ||||||| |||| || | ||  ||||||||||||||||||||    
T  16350566 ttgtgtgttaatattaccaaattgtcatttgtttgtatttgtattaaatttaacttttcatatttcaagacaagttatttagtattaattagaggtatgt 16350665  T
Q  170 ttaagaaaaataaaataaatgcatttagta 199  Q
    ||| |||||||| ||||||||||| |||||    
T  16350666 ttaggaaaaatataataaatgcatctagta 16350695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 34513279 - 34513122
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || |||||| ||||||||| ||||||||||| |||| ||||||| |||| || ||| ||||| ||||||| ||||||||    
T  34513279 ttgtgtgttaatattacgaaattatcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtaataattaggggtatgtt 34513180  T
Q  171 taagaaaaataaaataaatgcatttagtagtctgtataagagcttatatttaggaacaa 229  Q
    | ||||||| | ||||||||||| ||||| | || | | ||| ||| ||||||||||||    
T  34513179 t-agaaaaaaataataaatgcatctagtaatttgaaaaggagtttacatttaggaacaa 34513122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 11302909 - 11303008
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||| |||| |||| ||||||||||| |||| || |||| |||| ||| || ||||||||||||| |||||||||||||||||    
T  11302909 aatattacaaaattgtcctttgtttgcatgtgtattaaatttgacttttcacatttcaagacaaaatagtagtattaattaggggtatgtttaagaaaaa 11303008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 19838985 - 19839104
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| ||||   ||||| |||| ||| || ||| ||||||||| |||||||||| |||||     
T  19838985 aatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatttcaagataaattagtaggattaattaggggtatgtttaggaaaat 19839084  T
Q  180 taaaataaatgcatttagta 199  Q
     | ||||||||||| |||||    
T  19839085 aataataaatgcatctagta 19839104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 1763858 - 1763980
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| ||||||||||| |||| || |||| |||| ||  || ||||||||||||  ||||||||    
T  1763858 ttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcaaatttcaagacaagttagtagtattaattaagggtatgtt 1763957  T
Q  171 taagaaaaataaaataaatgcat 193  Q
    || |||||  | |||||||||||    
T  1763958 taggaaaataataataaatgcat 1763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 31945973 - 31945845
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataa-tagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| ||| ||||| ||||||||||| |||| ||||||| |||| || | | ||||||||||||| | ||||||    
T  31945973 ttgtgtgttaatattaccaaattgtcgtttgtttatatgtgtattaaatttgactttacatatttcaagacaagttagtagtattaattagggatatgtt 31945874  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  31945873 taggaaaaaaataataaatgcatctagta 31945845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 31153046 - 31152953
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtat 167  Q
    ||||| ||||||||||| ||||  ||| ||||||||| ||||||||||| |||| |||||||||| | ||  ||||| ||||||||||||||||    
T  31153046 tatgtcaatattactaaattgttatttgtttgtatgtgtattaaatttgacttttcatattttaaaacaagttaataatattaattagaggtat 31152953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 6791421 - 6791549
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||| ||| ||||| ||| ||||||||| ||||||||||| ||||  | |||| |||| || ||||| ||||||| |||  |||||||    
T  6791421 ttgtgtgttaatattattaaattgtcatttgtttgtatgtgtattaaatttgactttttaaatttcaagacaagataattgtattaactaggagtatgtt 6791520  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  6791521 taggaaaaaaataataaatgcatctagta 6791549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 15981839 - 15981967
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaat-aatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||  ||||||||| | ||||||||  |||| ||||||| |||| || | |||||||||||||| |||||||||    
T  15981839 ttgtgtgttaatattaccaaattgtcattagtttgtatgtgtcttaaatttaacttttcatatttcaagacaagttaatagtattaattataggtatgtt 15981938  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    |   ||||||| ||||||||||| |||||    
T  15981939 ttgaaaaaatataataaatgcatctagta 15981967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 30466029 - 30465901
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || || || ||| ||||||||| ||||||||||| |||| ||||||| |||| ||  || ||||||||||||  || |||||    
T  30466029 ttgtgtgttaatattaccaaattatcttttgtttgtatgtgtattaaatttgacttttcatatttcaagataagttagtagtattaattaaggggatgtt 30465930  T
Q  171 taagaaaaataaaataaatgcatttagta 199  Q
    || |||||| | ||||||||||| |||||    
T  30465929 taggaaaaaaataataaatgcatctagta 30465901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 33607424 - 33607561
Alignment:
Q  96 tcctttatttgtatgtatattaaatttgtctttccatattttaagagaaataat-agtattaattagaggtatgtttaagaaaaataaaataaatgcatt 194  Q
    |||||| ||||||||| | ||||||||| |||| ||||||| | || || | |  |||||||||||| |||||||||| |||||  |||||||||||||     
T  33607424 tcctttgtttgtatgtgtgttaaatttgacttttcatatttcatgataagttagcagtattaattaggggtatgtttaggaaaa--aaaataaatgcatc 33607521  T
Q  195 tagtagtctgtataagagcttatatttaggaacaattttt 234  Q
    ||||| | || | ||| | ||||||||||| |||||||||    
T  33607522 tagtaatttgaaaaagtgtttatatttagggacaattttt 33607561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 5895785 - 5895904
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtttaagaaaaa 179  Q
    |||||||| || ||||||||||||| ||||| ||||||||||  |||| ||||||| |||| || ||| | ||||||||||| || || |||| ||||||    
T  5895785 aatattacgaaattgtcctttatttttatgtgtattaaatttaacttttcatatttcaagacaagatagtggtattaattaggggcatatttaggaaaaa 5895884  T
Q  180 taaaataaatgcatttagta 199  Q
       ||||||||||| |||||    
T  5895885 attaataaatgcatctagta 5895904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 197512 - 197400
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttg-tctttccatattttaagagaaataa-tagtattaattagaggtatgt 169  Q
    |||| ||| ||||||| ||| ||||| ||| ||||||||| ||||||||||  | ||| || ||||||||| || | | ||||||||||||||||||| |    
T  197512 ttgtgtgtcaatattattaaattgtcatttgtttgtatgtgtattaaatttaattttttca-attttaagacaagttagtagtattaattagaggtatat 197414  T
Q  170 ttaagaaaaataaa 183  Q
    ||||||||||||||    
T  197413 ttaagaaaaataaa 197400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 22410901 - 22410781
Alignment:
Q  75 tatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatatt-ttaagagaaataa-tagtattaattagaggtatgttta 172  Q
    ||||| |||||||| || ||||| ||||||||||||| ||||||||||| | || || |||   |||| |||||| ||||||||||||  |||||| |||    
T  22410901 tatgttaatattaccaaattgtcttttatttgtatgtgtattaaatttgacctttcaaattacaaagacaaataagtagtattaattaagggtatgctta 22410802  T
Q  173 agaaaaataaaataaatgcat 193  Q
     |||||| | |||||||||||    
T  22410801 ggaaaaaaataataaatgcat 22410781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 16186618 - 16186743
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||||||| ||| |||| || |||||| || |||||||||||  |||||||| |||| ||||||| |||| || ||| | ||||||||||| | ||||||    
T  16186618 ttgtatgttaat-ttacgaaattgtcccttgtttgtatgtat--taaatttgacttttcatatttcaagacaagatagtggtattaattagtg-tatgtt 16186713  T
Q  171 taagaaaa-ataaaataaatgcatttagta 199  Q
    || ||||| ||||||||||||||| |||||    
T  16186714 taggaaaaaataaaataaatgcatctagta 16186743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 5084529 - 5084484
Alignment:
Q  155 taattagaggtatgtttaagaaaaata-aaataaatgcatttagta 199  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||    
T  5084529 taattaggggtatgtttaagaaaaaaataaataaatgcatttagta 5084484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 9461347 - 9461460
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagaga-aataatagtattaattagaggtatgtttaagaaaaa 179  Q
    ||||||||||| || | |||| ||||||||| ||||||||||| |||| ||||||| |||| |   || ||| ||||||||  ||||||||||  |||||    
T  9461347 aatattactaaattattctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaggttagtagaattaattatgggtatgtttagaaaaaa 9461446  T
Q  180 taaaataaatgcat 193  Q
     | |||||||||||    
T  9461447 aataataaatgcat 9461460  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 12514646 - 12514577
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    |||| ||| |||||||| || ||||| ||| ||||||||| ||||||||||| |||| ||||||| ||||    
T  12514646 ttgtgtgttaatattaccaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatttcaaga 12514577  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 3887925 - 3887881
Alignment:
Q  149 tagtattaattagaggtatgtttaagaaaaataaaataaatgcat 193  Q
    ||||||||||||| |||||||||| |||||| | |||||||||||    
T  3887925 tagtattaattaggggtatgtttaggaaaaaaataataaatgcat 3887881  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 61342 - 61220
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaaa-taatagtattaattagaggtatgtt 170  Q
    |||| ||| ||||||| ||| ||||||||||||| ||||| ||||||||||  |||| |||| ||||| | ||| || || |||||||||||| | ||||    
T  61342 ttgtgtgttaatattattaaattgtcctttatttatatgtgtattaaatttaacttttcataatttaaaataaattagtaatattaattagagatgtgtt 61243  T
Q  171 taagaaaaataa-aataaatgcat 193  Q
    | |||||||||| |||||||||||    
T  61242 t-agaaaaataataataaatgcat 61220  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 49181 - 49290
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttc-catattttaagagaaataa-tagtattaattagaggtatgt 169  Q
    |||| ||| ||||||| ||| ||||| ||| |||| |||| ||||||||||| ||||  ||||||| || | |||| | ||||||||||||| |||||||    
T  49181 ttgtgtgttaatattattaaattgtcatttgtttgcatgtttattaaatttgactttttcatatttcaaaacaaattagtagtattaattaggggtatgt 49280  T
Q  170 ttaagaaaaa 179  Q
    ||| ||||||    
T  49281 ttaggaaaaa 49290  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 99877 - 99778
Alignment:
Q  72 ttgtatgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatagtattaattagaggtatgtt 170  Q
    |||| ||| |||||||| || ||||| ||| |||| |||| ||||||||||| |||| ||||||| |||| ||  || |||||||||||||||| |||||    
T  99877 ttgtgtgttaatattacgaaattgtcttttgtttgaatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattagaggcatgtt 99778  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 214672 - 214795
Alignment:
Q  81 aatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaagagaa-ataatag--tattaattagaggtatgttt--aaga 175  Q
    |||||||| || ||||| ||| ||||||||| ||||||||||| ||||  ||||||||||| ||  || |||  |||||||||| |||||||||  || |    
T  214672 aatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatattttaagataagttagtagtatattaattaggggtatgtttagaaaa 214771  T
Q  176 aaaataaaataaatgcatttagta 199  Q
    || ||| ||||||||||| |||||    
T  214772 aatatataataaatgcatctagta 214795  T

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Target: scaffold0699 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 7627 - 7691
Alignment:
Q  77 tgtaaatattactaagttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    ||||| |||||| || ||||||||| ||| ||||| ||||||||||| |||| ||||||| ||||    
T  7627 tgtaagtattacaaaattgtcctttgtttatatgtgtattaaatttgacttttcatatttcaaga 7691  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 22126 - 22174
Alignment:
Q  93 ttgtcctttatttgtatgtatattaaatttgtctttccatattttaaga 141  Q
    ||||||||| ||||||||||||||||||||  |||| ||||||| ||||    
T  22126 ttgtcctttgtttgtatgtatattaaatttaacttttcatatttgaaga 22174  T

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