View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_18 (Length: 211)
Name: NF3860_low_18
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 2953737 - 2953863
Alignment:
| Q |
18 |
atatgatgccaattcttttgtcaaggtacaatatctcattattttacatatcatttgtcaaacctccaatacgaagacaatgttaaaagaagaaaagtat |
117 |
Q |
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| T |
2953737 |
atatgatggcaattcttttgtcaaggtacaatatctcattattttacat--catttgtcaaacctccaatatgaagacaatgttaaaagaagaaaagtat |
2953834 |
T |
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| Q |
118 |
-aaaaagaactaaacaatgattctggcac |
145 |
Q |
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| T |
2953835 |
aaaaaagaactaaacaatgattctggcac |
2953863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 32424667 - 32424774
Alignment:
| Q |
24 |
tgccaattcttttgtcaaggtacaatatctcattattttacatatcatttgtcaaacctccaatacgaagacaatgttaaaagaagaaaagtataaaaag |
123 |
Q |
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||||||||||||||||| |||||| |||||| ||||||| ||| ||| ||||| |||||||||| ||||||| ||||||||||||| |||| || | | |
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| T |
32424667 |
tgccaattcttttgtcagggtacagtatctccttattttgcat--catctgtcagacctccaatatgaagacagtgttaaaagaagacaagtgtagatac |
32424764 |
T |
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| Q |
124 |
aactaaacaa |
133 |
Q |
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|||||||||| |
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| T |
32424765 |
aactaaacaa |
32424774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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