View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3860_low_19 (Length: 205)

Name: NF3860_low_19
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3860_low_19
NF3860_low_19
[»] chr1 (4 HSPs)
chr1 (19-187)||(47574635-47574803)
chr1 (21-171)||(47584337-47584487)
chr1 (49-91)||(47607373-47607415)
chr1 (48-91)||(47593107-47593150)
[»] chr5 (3 HSPs)
chr5 (21-76)||(470074-470129)
chr5 (49-88)||(22689341-22689380)
chr5 (21-82)||(454543-454604)
[»] chr7 (4 HSPs)
chr7 (30-88)||(20231535-20231593)
chr7 (30-88)||(20279503-20279561)
chr7 (52-88)||(20168098-20168134)
chr7 (52-88)||(20264016-20264052)
[»] chr2 (4 HSPs)
chr2 (52-88)||(2707324-2707360)
chr2 (51-88)||(2682031-2682068)
chr2 (52-88)||(2717094-2717130)
chr2 (52-88)||(2723716-2723752)
[»] scaffold0090 (1 HSPs)
scaffold0090 (49-88)||(8284-8323)
[»] chr4 (2 HSPs)
chr4 (51-89)||(48484012-48484050)
chr4 (52-88)||(40823849-40823885)
[»] chr3 (1 HSPs)
chr3 (49-82)||(1077389-1077422)
[»] chr8 (1 HSPs)
chr8 (39-91)||(10401663-10401715)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 47574635 - 47574803
Alignment:
Q  19 tgaaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatac 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47574635 tgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatac 47574734  T
Q  119 atgcacaattgtagggacatagtaagtttctaattcctactttacttcattcaatttctcatgtctatt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47574735 atgcacaattgtagggacatagtaagtttctaattcctactttacttcattcaatttctcatgtctatt 47574803  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 47584337 - 47584487
Alignment:
Q  21 aaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatacat 120  Q
    ||||||||||||||| | |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  || |    
T  47584337 aaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagattttggcatggctagaattgtatctatagatcaaattgaagaaagcacgt 47584436  T
Q  121 gcacaattgtagggacatagtaagtttctaattcctactttacttcattca 171  Q
    |||| |||||||| |||||||||| ||   ||||||||||||||| |||||    
T  47584437 gcacgattgtaggaacatagtaagcttacgattcctactttactttattca 47584487  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 47607373 - 47607415
Alignment:
Q  49 atatgaatccaaaaatatcagattttggcatggctagaattgt 91  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  47607373 atatgaatcctaaaatctcagattttggcatggctagaattgt 47607415  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 47593107 - 47593150
Alignment:
Q  48 aatatgaatccaaaaatatcagattttggcatggctagaattgt 91  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||    
T  47593107 aatatgaatcctaaaatatcagattttggaatggctaggattgt 47593150  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 470129 - 470074
Alignment:
Q  21 aaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttgg 76  Q
    ||||||||||||||  |||||||||  || ||||||||||||||||||||||||||    
T  470129 aaacctagcaatgtattgttagatgacaaaatgaatccaaaaatatcagattttgg 470074  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 22689380 - 22689341
Alignment:
Q  49 atatgaatccaaaaatatcagattttggcatggctagaat 88  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  22689380 atatgaatccaaagatttcagattttggcatggctagaat 22689341  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 454604 - 454543
Alignment:
Q  21 aaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggc 82  Q
    |||||||||||| |  ||||||||   ||||||||||||||||||||||| ||||| |||||    
T  454604 aaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggc 454543  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 20231535 - 20231593
Alignment:
Q  30 aatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaat 88  Q
    ||||||||||||||||  ||  ||||||||||||||||||| ||||| |||||||||||    
T  20231535 aatgtcctgttagatgagaagttgaatccaaaaatatcagactttggtatggctagaat 20231593  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 20279503 - 20279561
Alignment:
Q  30 aatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaat 88  Q
    ||||||||||||||||   |  ||||||||||||||||||| ||||| |||||||||||    
T  20279503 aatgtcctgttagatgaggagctgaatccaaaaatatcagactttggtatggctagaat 20279561  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 20168134 - 20168098
Alignment:
Q  52 tgaatccaaaaatatcagattttggcatggctagaat 88  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  20168134 tgaatccaaaaatatcagaatttggtatggctagaat 20168098  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 20264016 - 20264052
Alignment:
Q  52 tgaatccaaaaatatcagattttggcatggctagaat 88  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  20264016 tgaatccaaaaatatcagactttggtatggctagaat 20264052  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2707360 - 2707324
Alignment:
Q  52 tgaatccaaaaatatcagattttggcatggctagaat 88  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2707360 tgaatccaaaaatatctgattttggcatggctagaat 2707324  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 2682068 - 2682031
Alignment:
Q  51 atgaatccaaaaatatcagattttggcatggctagaat 88  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2682068 atgaatccaaaaatatcagactttgggatggctagaat 2682031  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2717130 - 2717094
Alignment:
Q  52 tgaatccaaaaatatcagattttggcatggctagaat 88  Q
    |||||||||||||||| || |||||||||||||||||    
T  2717130 tgaatccaaaaatatccgactttggcatggctagaat 2717094  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2723752 - 2723716
Alignment:
Q  52 tgaatccaaaaatatcagattttggcatggctagaat 88  Q
    |||||||||||||||| || |||||||||||||||||    
T  2723752 tgaatccaaaaatatccgactttggcatggctagaat 2723716  T

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Target: scaffold0090 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 8323 - 8284
Alignment:
Q  49 atatgaatccaaaaatatcagattttggcatggctagaat 88  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  8323 atatgaatcccaaaatttcagattttggcatggctagaat 8284  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 48484050 - 48484012
Alignment:
Q  51 atgaatccaaaaatatcagattttggcatggctagaatt 89  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  48484050 atgaatccaaagatatcagattttggtatggctagaatt 48484012  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 40823885 - 40823849
Alignment:
Q  52 tgaatccaaaaatatcagattttggcatggctagaat 88  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  40823885 tgaatccaaaaatatcagactttggtatggctagaat 40823849  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 1077389 - 1077422
Alignment:
Q  49 atatgaatccaaaaatatcagattttggcatggc 82  Q
    ||||||||||||||||||||||||||||| ||||    
T  1077389 atatgaatccaaaaatatcagattttggcttggc 1077422  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 10401715 - 10401663
Alignment:
Q  39 ttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgt 91  Q
    |||||||  ||||||| |||||||||||||||||||||  | |||||||||||    
T  10401715 ttagatgaaaatatgattccaaaaatatcagattttggtcttgctagaattgt 10401663  T

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