View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3860_low_2 (Length: 513)

Name: NF3860_low_2
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3860_low_2
NF3860_low_2
[»] chr1 (3 HSPs)
chr1 (95-494)||(52750446-52750856)
chr1 (95-176)||(49652675-49652758)
chr1 (95-163)||(24508490-24508558)
[»] chr3 (2 HSPs)
chr3 (97-491)||(33389469-33389859)
chr3 (95-163)||(52254559-52254627)
[»] chr2 (2 HSPs)
chr2 (289-494)||(3093602-3093797)
chr2 (95-258)||(3093432-3093603)
[»] chr7 (5 HSPs)
chr7 (239-342)||(30828801-30828906)
chr7 (409-489)||(30829383-30829463)
chr7 (95-163)||(8685012-8685080)
chr7 (95-163)||(17236344-17236412)
chr7 (351-394)||(30829338-30829381)
[»] chr6 (1 HSPs)
chr6 (95-163)||(901702-901770)
[»] chr4 (1 HSPs)
chr4 (98-151)||(44182845-44182898)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 95 - 494
Target Start/End: Original strand, 52750446 - 52750856
Alignment:
Q  95 ccaattttcccattaaaaaa-catccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa---------atctttatatctaatcaccac 184  Q
    |||||||| ||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||         |||||||||||||||||| ||    
T  52750446 ccaatttttccattaaaaaaacatccctttcaatcaaaacaacacaatttctcaatcttcctaaaccaaatcaaccaaaatctttatatctaatcactac 52750545  T
Q  185 aannnnnnnnaaaatccaaaactactctccaccaccacctgcacactactcacctttgcttcatttcctgctaatatctcctccctaattcttcccacac 284  Q
    ||        |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52750546 aattttttttaaaatccaaaactactctccaccaccacctgggcactactcacctttgcttcatttcctgctaatatctcctccctaattcttcccacac 52750645  T
Q  285 ccccaaccaactactcactcttctaacaaactcctccctataggactctccgctactgtcgttgttgttgtcgttgacagaagcaacaaatgaagctcaa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  52750646 ccccaaccaactactcactcttctaacaaactcctccctataggactctccgctactgtcgttgttgttgtcgttggcagaagcaacaaatcaagctcaa 52750745  T
Q  385 -tttcatgttcctcttcttctttcctcttcttcttttggttcgcaggagcagtctcattcgatgagtatctcaccaccggcgagttctagtccccggaga 483  Q
     |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||    
T  52750746 ttttcatgttcctcttcttctttcctcttcttcttttggctcgtaggagcagtctcattcgatgagtctctcaccaccgacgagttctagtccccgaaga 52750845  T
Q  484 acacaaaacaa 494  Q
    |||||||||||    
T  52750846 acacaaaacaa 52750856  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 49652675 - 49652758
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcct--aaaccaaaatctttatatcta 176  Q
    |||||||| ||||| | ||||||| ||||||| | |||||||| ||||||| |||||||||  |||||||||||||||||||||    
T  49652675 ccaatttttccatttataaacatctctttcaatctaaacaacacaatttctcaatcttcctaaaaaccaaaatctttatatcta 49652758  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 24508490 - 24508558
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa 163  Q
    ||||||||  |||||||||||||||||||||| | |||||||| ||||||| ||||| |||| ||||||    
T  24508490 ccaattttttcattaaaaaacatccctttcaatctaaacaacacaatttctcaatctccctagaccaaa 24508558  T

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Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 97 - 491
Target Start/End: Original strand, 33389469 - 33389859
Alignment:
Q  97 aattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa---------atctttatatctaatcaccacaan 187  Q
    |||||| |||||||||| |||||||||||| |||||||||| ||||| | ||||| |||||||||||         |||||||||||||||||||||||     
T  33389469 aatttttccattaaaaa-catccctttcaatcaaaacaacacaatttttcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaat 33389567  T
Q  188 nnnnnnnaaaatccaaaactactctccaccaccacctgcacactactcacctttgcttcatttcctgctaatatctcctccctaattcttc-ccacaccc 286  Q
           ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33389568 tttttttaaa-tcaaaaactactctccaccaccacctgcgcactactcacctttgcttcatttcctgctaatatctcctccctaattcttctccacaccc 33389666  T
Q  287 ccaaccaactactcactcttctaacaaactcctccctataggactctccgctactgtcgttgttgttgtcgttgacagaagcaacaaatgaagctcaatt 386  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  33389667 ccaactaactactcactcttctaacaaactcctccctataggactctccgctactgtcgttgttgttgtcgttgtcagaagcaacaaatcaagctcaatt 33389766  T
Q  387 tcatgttcctcttcttctttcctcttcttcttttggttcgcaggagcagtctcattcgatgagtatctcaccaccggcgagttctagtccccggagaaca 486  Q
    || |||||||||||||||            |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  33389767 tcttgttcctcttcttct------------ttttggctcgcaggagcagtctcatttgatgagtctctcaccaccggcgagttctagtccccagagaaca 33389854  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 52254559 - 52254627
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa 163  Q
    |||||| | ||||||||||||||||||||||| | |||||| | ||||||| ||||| |||| ||||||    
T  52254559 ccaattgttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatctccctagaccaaa 52254627  T

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Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 289 - 494
Target Start/End: Original strand, 3093602 - 3093797
Alignment:
Q  289 aaccaactactcactcttctaacaaactcctccctataggactctccgctactg---tcgttgttgttgtcgttgacagaagcaacaaatgaagctcaat 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||| || ||||||||||||||||||||||||| |||||||||    
T  3093602 aaccaactactcactcttctaacaaactcctccctataggactctctgctactgtcatcgtcgtcgttgtcgttgacagaagcaacaaatcaagctcaat 3093701  T
Q  386 ttcatgttcctcttcttctttcctcttcttcttttggttcgcaggagcagtctcattcgatgagtatctcaccaccggcgagttctagtccccggagaac 485  Q
    ||| ||             |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  3093702 ttcctg-------------ttcctcttcttcttttggctcgcatgagcagtctcattcgatgagtctctcaccaccggtgagttctagtcctcggagaac 3093788  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 3093432 - 3093603
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa---------atctttatatctaatcaccaca 185  Q
    |||||||| ||||||||||| ||||||||||| |||||||||| ||||| | ||||| |||||||||||         ||||||||||||||||||||||    
T  3093432 ccaatttttccattaaaaaatatccctttcaatcaaaacaacacaatttatcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccaca 3093531  T
Q  186 annnnnnnnaaaatccaaaactactctccaccaccacctgcacactactcacctttgcttcatttcctgctaa 258  Q
    |        ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  3093532 attttttttaaa-tccaaaactactctccaccatcacctgcgcactactcacctttgcttcatttcctgctaa 3093603  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 30828801 - 30828906
Alignment:
Q  239 tttgcttcatttcctgctaatatctcctccctaattcttcc-cacacccc-caaccaactactcactcttctaacaaactcctccctataggactctccg 336  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30828801 tttgcttcatttcctgctaacatctcctccctaattcttcctcacaccccccaaccaactactcactcttctaacaaactcctccctatagcactctccg 30828900  T
Q  337 ctactg 342  Q
    ||||||    
T  30828901 ctactg 30828906  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 489
Target Start/End: Original strand, 30829383 - 30829463
Alignment:
Q  409 tcttcttcttttggttcgcaggagcagtctcattcgatgagtatctcaccaccggcgagttctagtccccggagaacacaa 489  Q
    |||||||||||||| |||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  30829383 tcttcttcttttggctcgccggagcagtctcattcgaggagtctctcaccgccggcgagttctagtccccggagaacacaa 30829463  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 8685012 - 8685080
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa 163  Q
    |||||||| ||||| |||||||||| |||||| | |||||||| ||||||| ||||| |||||||||||    
T  8685012 ccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttctcaatctccctaaaccaaa 8685080  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 17236344 - 17236412
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa 163  Q
    |||||||| ||||||||||||||||||||||| | |||||| | ||||||| ||||| |||| ||||||    
T  17236344 ccaatttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatctccctagaccaaa 17236412  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 30829338 - 30829381
Alignment:
Q  351 gttgtcgttgacagaagcaacaaatgaagctcaatttcatgttc 394  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||    
T  30829338 gttgtcgttaacagaagcaataaatcaagctcaatttcatgttc 30829381  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 901702 - 901770
Alignment:
Q  95 ccaattttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatcttcctaaaccaaa 163  Q
    |||||||| ||||||||||||||||||||||| | |||||||| ||||| | |||||  ||||||||||    
T  901702 ccaatttttccattaaaaaacatccctttcaatctaaacaacacaatttatcaatctctctaaaccaaa 901770  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 44182845 - 44182898
Alignment:
Q  98 attttcccattaaaaaacatccctttcaaacaaaacaacataatttcttaatct 151  Q
    ||||| ||||||||||||||||||||||| | |||||| | ||||||| |||||    
T  44182845 atttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatct 44182898  T

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