View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_3 (Length: 423)
Name: NF3860_low_3
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Original strand, 2409299 - 2409697
Alignment:
| Q |
16 |
ccttaatcttcttatgaagcaacacaacaaactaaaatggagagtaattaaaatcatacaactgaaagggagtcattgaagaaacatccatccattgtaa |
115 |
Q |
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| T |
2409299 |
ccttaatcttcttatgaagcaacacaacaaactaaaatggagagtaa----aatcatacaactgaaagggagtcattgaagaaacatccatccattgtaa |
2409394 |
T |
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| Q |
116 |
aataagaatccaaatgcttccaaaatgattacacctcaactaatttatcccacataagtttgttaacnnnnnnnagattattactttcggtgaccatgtt |
215 |
Q |
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| T |
2409395 |
aataagaatccaaatgcttccaaaatgattacacctcaactaatttatcccacataagtttgttaactttttttagattattactttcggtgaccatgtt |
2409494 |
T |
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| Q |
216 |
agtttaaatttaaattcacggacaacttggcaatagtaagaaaaaagacaaatgcttgttgtcgttgataaaagacaaatgaatctaacactgttgacaa |
315 |
Q |
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| T |
2409495 |
agtttaaatttaaattcacggacaacttggcaatagtaagaaaaaagacaaatgcttgttgtcgttgataaaagacaaatgaatctaacactgttgacaa |
2409594 |
T |
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| Q |
316 |
tgnnnnnnnnnncgggtgaagataactatatcgaatgaagtttgtgcccacatatggcaaaggatttcatgtggacgttaaaagtttatagaaatggtta |
415 |
Q |
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| T |
2409595 |
tg---aaaaaaacgggtgaagataactatatcgaatgaagtttgtgcccac--atggcaaaggatttcatgtggacgttaaaagtttatagaaatggtta |
2409689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 36908305 - 36908435
Alignment:
| Q |
20 |
aatcttcttatgaagcaacacaacaaactaaaatggagagtaattaaaatcatacaactgaaagggagtcattgaagaaacatccatccattgtaaaata |
119 |
Q |
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||||||||| | |||| ||||||| |||||||||||||||||| ||||| | || ||||||||||||| |||||||| |||||||||| || ||| |
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| T |
36908305 |
aatcttcttgttaagccacacaacgaactaaaatggagagtaa----aatcaaataattgaaagggagtcacggaagaaacgcccatccattgcaatata |
36908400 |
T |
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| Q |
120 |
agaatccaaatgcttccaaaatgattacacctcaa |
154 |
Q |
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| T |
36908401 |
agaattcaaatgttttcaaaatgattacacctcaa |
36908435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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