View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_4 (Length: 382)
Name: NF3860_low_4
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 42014261 - 42013911
Alignment:
| Q |
17 |
aatatctgctagggaaagtaatatttggttttgactttttaatatccttttaactattcttttttctcacttattccacagtggaagcttcacatacatg |
116 |
Q |
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| T |
42014261 |
aatatctgctagggaaagtaatatttggttttgactttttaatatccttttaactattcttttttctcacttattccacagtggaagcttcacatacatg |
42014162 |
T |
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| Q |
117 |
agctcgaggaggaaatgaaaatcaatccttccatcaaatatgttctttaccaggtaggtttgtctggctaagttaatcaaacaatctgaaattgaatata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42014161 |
agctcgaggaggaaatgaaaatcaatccttccatcaaatatgttctttaccaggtaggtttgtctggctaagttaatcaatcaatctgaaattgaatata |
42014062 |
T |
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| Q |
217 |
agcatccatcattttcagcatcccctcccaaaaaatccttattttctggtaaatcttaatcaaggaaacttgtaaacttccaaaattttctttattttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014061 |
agcatccatcattttcagcatcccctcccaaaaaatccttattttctggtaaatcttaatcaaggaaacttgtaaacttccaaaattttctttattttcc |
42013962 |
T |
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| Q |
317 |
tattcaactataaattactatttgatctgtgatttatataatacaatttct |
367 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42013961 |
tattcaattataaattactatttgatctgtgatttatgtaatacaatttct |
42013911 |
T |
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