View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_6 (Length: 351)
Name: NF3860_low_6
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 22049593 - 22049466
Alignment:
| Q |
197 |
catcataaaatatgatgaaaaaggatactacactatccttagagtaaatattcttttattcattcataagattaactccaccatttatatattcaaaagt |
296 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22049593 |
catcataaaatatgatgaaaaaggatactgcactatacttagactaaatattcttttattcattcataagattaactccaccatttatatattccaaagt |
22049494 |
T |
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| Q |
297 |
caacaaatataataataaaggacgtata |
324 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
22049493 |
caacaaatataataataaaggacgtata |
22049466 |
T |
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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 22049788 - 22049691
Alignment:
| Q |
1 |
tatgtaatttgtttagtattataatgccattttcaactaatcctaggatatgttatctttcttatttcttttgctgttatcccacaccaacacgaatc |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
22049788 |
tatgtaatttgtttagtattataatgccattttcaactaatcctaggatatgttatctttcttatttcttttgctattatcccacaccaacatgaatc |
22049691 |
T |
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