View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3860_low_7 (Length: 335)
Name: NF3860_low_7
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3860_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 572904 - 572579
Alignment:
| Q |
1 |
tatttatttatttgatttctgtgtttgtggtctctctctaaaagtgggtgcaagtttacaatagaggaagagaggattgtgatagagttgcaggaacaat |
100 |
Q |
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| T |
572904 |
tatttatttatttgatttttgtgtttgtggtctctctctaaaagtgggtgcaagtttacaatagaggaagagaggattgtgatagagttgcaggaacaat |
572805 |
T |
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| Q |
101 |
ttggaaacaaatgggctaagattgcatcctatttaccaggaagaacagacaatgatgtaaaaaatttctggagcagtagacaaaaaaggttggctaggct |
200 |
Q |
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| T |
572804 |
ttggaaacaaatgggctaagattgcatcctatttaccaggaagaacagacaatgatgtaaaaaatttctggagcagtagacaaaaaaggttggctaggct |
572705 |
T |
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| Q |
201 |
tctcaaaacatcatcgtcaacaacctcaaagtcacacaaaaacaaagccaaagtttcttcccatgttccatcttacgaggtaattaaaaaacacatgtta |
300 |
Q |
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| T |
572704 |
tctcaaaacatcatcatcaacaacctcaaagtcacacaaaaacaaagccaaagtttcttcccatgttccatcttacgaggtaattaaaaaacacatgtta |
572605 |
T |
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| Q |
301 |
ctctttttcttgtcttggttctctgc |
326 |
Q |
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| T |
572604 |
ctctttttcttgtcttggttctctgc |
572579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 10212711 - 10212602
Alignment:
| Q |
49 |
tgcaagtttacaatagaggaagagaggattgtgatagagttgcaggaacaatttggaaacaaatgggctaagattgcatcctatttaccaggaagaacag |
148 |
Q |
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| T |
10212711 |
tgcaagttttcatcagaggaagaaagggtggtgatagaattacaggggcaatttgggaacaaatgggccaaaattgctacatatttggaagggagaacag |
10212612 |
T |
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| Q |
149 |
acaatgatgt |
158 |
Q |
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| T |
10212611 |
acaatgatgt |
10212602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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