View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3860_low_8 (Length: 325)

Name: NF3860_low_8
Description: NF3860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3860_low_8
NF3860_low_8
[»] chr8 (1 HSPs)
chr8 (19-314)||(28520119-28520414)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 28520119 - 28520414
Alignment:
Q  19 catatggtttgctaatatctatttttaatgttgcttcccctttcttacctcgagtcctgcacttcaaataatgtatgatttctaaggcgacaaagacatt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  28520119 catatgatttgctaatatctatttttaatgttgcttcccctttcttacctcgagtcttgcacttcaaataatatatgatttctaaggcgacaaacacatt 28520218  T
Q  119 atctgtaatggatcttcctacaacaaagcctggttgtttaattgcttcagaaaactcgacatcattaaaaggagcgataagcatttggttatcctccatg 218  Q
     |||||||||||||||||| |||||||||||| || |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28520219 ttctgtaatggatcttcctgcaacaaagcctgattttttaaccgcttcagaaaactcgacatcattaaaaggagcgataagcatttggttatcctccatg 28520318  T
Q  219 ttcagaaaagtttggacatcttgtaaaaccggttcttgctcacaattatggcagcaaaaatattggaaaaataggcgagttcacataacccttcat 314  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28520319 ttcagacacgtttggacatcttgtaaaatcggttcttgctcacaattatggcagcaaaaatattggaaaaataggcgagttcacataacccctcat 28520414  T

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