View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3861_high_1_N (Length: 418)
Name: NF3861_high_1_N
Description: NF3861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3861_high_1_N |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 22 - 418
Target Start/End: Complemental strand, 8478538 - 8478142
Alignment:
| Q |
22 |
catcatcaaaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478538 |
catcatcaaaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatc |
8478439 |
T |
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| Q |
122 |
atacctaacggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtc |
221 |
Q |
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| T |
8478438 |
atacctaacggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcttcaaacttcaacacacaacgaatcgatcacatctatgtc |
8478339 |
T |
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| Q |
222 |
gatccacacaacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcccctctccgtcgctggctcgacactattctccccgacg |
321 |
Q |
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| T |
8478338 |
gatccacacaacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacg |
8478239 |
T |
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| Q |
322 |
aagtttacaatctcgctgcacagtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttct |
418 |
Q |
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| T |
8478238 |
aagtttacaatctcgctgcacagtcacacgtcgcggtttcgtttgagattcccgattacactgctgatgttgttgctacaggtgctctccgtcttct |
8478142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 8486998 - 8486610
Alignment:
| Q |
30 |
aaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
129 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8486998 |
aaaaccccaacaccatcaacaacaaacggcgacaccactccaccaccgcggaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
8486899 |
T |
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| Q |
130 |
cggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccaca |
229 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8486898 |
cagaattcctcctcaacaaaggctactccgtccacggcctaattcgtcgttcgtcaaacttcaacacacaacgaattgatcacatctatgtcgatccaca |
8486799 |
T |
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| Q |
230 |
caacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcccctctccgtcgctggctcgacactattctccccgacgaagtttac |
329 |
Q |
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| T |
8486798 |
cgacgctcacaaagctcatatgaagcttcactatgccgatctctccgacgcttccgctctccgtcgctggctcgacactatcctccctgacgaagtttac |
8486699 |
T |
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| Q |
330 |
aatctcgctgcacagtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttct |
418 |
Q |
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|| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
8486698 |
aacctcgccgcacagtctcatgtcgcggtttcgtttgagattcctgattacactgcagatgttgttgctactggtgctctccgtcttct |
8486610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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