View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3861_high_4 (Length: 347)
Name: NF3861_high_4
Description: NF3861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3861_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 47728716 - 47729054
Alignment:
| Q |
11 |
gcagagttatagacactagacattgcatacatgcatattatggaaaaacaataataaacctcagcatgttgaagttcctagtaattaatcaaatgaagtg |
110 |
Q |
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| T |
47728716 |
gcagagttatagacactagacattgcatacatgcatattatggaaaaacaataataaacctcagcatgtttaagttcctagtaattaatcaaatgaagtg |
47728815 |
T |
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| Q |
111 |
--agaagaaaattacccagtcatgacaagagaggagaaaatggtcagcaccattgcttctattccaataaggatacttatgagccacaacatttacataa |
208 |
Q |
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| T |
47728816 |
tgagaagaaaattacccagtcatgacaagagaggagaaaatggtcagcaccattgcttctattccaataaggatacttatgagccacaacatttacataa |
47728915 |
T |
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| Q |
209 |
tcctccaccattctatgaagtctgtcacggttgaaatcctttttggacataattggcttataaacatattgaaccacatttgcaacactaaaaggaagga |
308 |
Q |
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| T |
47728916 |
tcctccaccattctatgaagtctgtcacggttgaaatcctttttggacataattggcttataaacatattgaaccacatttgcaacactaaaaggaagga |
47729015 |
T |
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| Q |
309 |
aaaatatgtgtgcctcgttagggtgcttagccttaaaag |
347 |
Q |
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| T |
47729016 |
aaaatatgtgtgcctcattagggtgcttagccttaaaag |
47729054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 263535 - 263600
Alignment:
| Q |
121 |
tacccagtcatgacaagagaggagaaaatggtcagcaccattgcttctattccaataaggatactt |
186 |
Q |
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| T |
263535 |
tacccaatcatggcatgaaagtagaaaatggtcagcaccttggcttctgttccaataaggatactt |
263600 |
T |
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